FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIBS (60 kDa chaperonin OS=Acinetobacter baumannii (strain SDF) GN=groL PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M+ GV+ +A+AVKVT+GPKGRNV+I++S G P +TKDGVTVA  I  +DK +++GA LV++V+  TN  AGDGTT ATVL QAIL EG KSV AG+N MDL+ GI +A+  V+ +++S A+     + I QV +ISAN +  +G+L+A+AMEKVGKEGVITV +G+   + L+ V GM+  RGYISPYF     T   ELENP
Sbjct:    3 AKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVGKLIAQAMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIBC (60 kDa chaperonin OS=Acinetobacter baumannii (strain ACICU) GN=groL PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M+ GV+ +A+AVKVT+GPKGRNV+I++S G P +TKDGVTVA  I  +DK +++GA LV++V+  TN  AGDGTT ATVL QAIL EG KSV AG+N MDL+ GI +A+  V+ +++S A+     + I QV +ISAN +  +G+L+A+AMEKVGKEGVITV +G+   + L+ V GM+  RGYISPYF     T   ELENP
Sbjct:    3 AKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVGKLIAQAMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIB5 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB0057) GN=groL PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M+ GV+ +A+AVKVT+GPKGRNV+I++S G P +TKDGVTVA  I  +DK +++GA LV++V+  TN  AGDGTT ATVL QAIL EG KSV AG+N MDL+ GI +A+  V+ +++S A+     + I QV +ISAN +  +G+L+A+AMEKVGKEGVITV +G+   + L+ V GM+  RGYISPYF     T   ELENP
Sbjct:    3 AKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVGKLIAQAMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIB3 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB307-0294) GN=groL PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 118/216 (54.63%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M+ GV+ +A+AVKVT+GPKGRNV+I++S G P +TKDGVTVA  I  +DK +++GA LV++V+  TN  AGDGTT ATVL QAIL EG KSV AG+N MDL+ GI +A+  V+ +++S A+     + I QV +ISAN +  +G+L+A+AMEKVGKEGVITV +G+   + L+ V GM+  RGYISPYF     T   ELENP
Sbjct:    3 AKDVKFGDSARSKMIAGVNVLADAVKVTLGPKGRNVVIDRSFGAPHITKDGVTVAKEISLKDKFENMGAQLVREVSSKTNDIAGDGTTTATVLAQAILNEGIKSVTAGMNPMDLKRGIDIAVKTVVENIRSIAKPADDFKAIEQVGSISANSDTTVGKLIAQAMEKVGKEGVITVEEGSGFEDALDVVEGMQFDRGYISPYFANKQDTLTAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.089e-60
Identity = 117/215 (54.42%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGVTVA  IE  DK +++GA +V++VA  TN  AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI +A+  V+  L   A  I T EE+ QV TI+ NG+  +G+++A AM+KVG EGVITV +  T   ELE V GM+  RGY+SPYFVT+      +LE+
Sbjct:    3 AKDVKFSRDARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSDVVWTLIKNATKIKTSEEVAQVGTIAGNGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLED 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 114/217 (52.53%), Postives = 160/217 (73.73%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  ARA ML GV+ +A AVKVT+GPKGRNV+++KS G P++TKDGV+VA  IE  DK +++GA +V++V+  T   AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +A++AV+  LK  ++ ++  +EI QV  ISAN ++ +G+++A AM+KVGKEGVITV +   +   L+ V GM+  RGY+SPYFVT+      ++ENPL
Sbjct:    3 AKEVKFGEAARAKMLNGVNILANAVKVTLGPKGRNVVLDKSWGAPRMTKDGVSVAKEIELEDKFENMGAQMVREVSSKTADVAGDGTTTATVLAQAIIREGMKAVAAGMNPMDLKRGIDLAVEAVVVGLKGISREVANSQEIAQVGAISANSDKVVGDMIAEAMDKVGKEGVITVEEAKGLETTLDVVEGMQFDRGYLSPYFVTNADKMLVQMENPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_KLEPN (60 kDa chaperonin OS=Klebsiella pneumoniae GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 119/216 (55.09%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ A + +LK+ +   S  + I QV TISAN +  +G+L+A  ++KVGKEGVITV DG  + +EL+ V GM+  RGY+SPYF+  P T   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVLAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAE-VDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPDTGAVELESP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 120/217 (55.30%), Postives = 156/217 (71.89%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK+++F V ARAA+ +GV ++AEAVKVT+GPKGRNV+I+K  G P VTKDGVTVA  IE  D  +++GA +VK+VA  T+  AGDGTT ATVL QAI  EG K+V AG N M L+ GI+ A+  ++ +LK  +   +  +EI QV TISAN + EIG L+A AMEKVGK+GVITV +   +   LE+V GM+  RGY+SPYFVTDP+  +  LEN L
Sbjct:    3 AKELHFNVDARAALKRGVDQLAEAVKVTLGPKGRNVVIDKKFGAPTVTKDGVTVAKEIELADPIENMGAQMVKEVATKTSDLAGDGTTTATVLAQAIFREGLKNVTAGSNPMALKRGIEKAVAGIVEELKRISVPTTGKKEIAQVGTISANNDPEIGNLIAEAMEKVGKDGVITVEEAKGLETTLETVDGMQFDRGYLSPYFVTDPEKMEAVLENAL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 121/218 (55.50%), Postives = 158/218 (72.48%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMI-STPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK+I F + AR  + +GV  +A AVKVT+GPKGRNVII KS G P VTKDGVTVA  IE +D  +++GA +VK+VA  TN  AGDGTT ATVL QAI+ EG K+VAAG N MDL+ GI  A++A+++DL  +A+++ S  E+I Q+A+ISAN +  IGEL+A A  KVGKEGVITV +       ++ V GM+  RGY+SPYFVT+P+    ELENP
Sbjct:    1 MAKNIKFDIEARDGLKRGVDALANAVKVTLGPKGRNVIIGKSFGGPTVTKDGVTVAKEIELQDPLENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEGLKNVAAGANPMDLKRGIDKAVEAIVADLTKQAKVVGSDSEKIKQIASISANNDEVIGELIANAFAKVGKEGVITVEEAKGTDTYVDVVEGMQFDRGYLSPYFVTNPEKMDAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_DESPS (60 kDa chaperonin OS=Desulfotalea psychrophila GN=groL PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.729e-60
Identity = 118/215 (54.88%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   78 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            KDI +GV AR ++L GV+ +A AVKVT+GPKGRNV+IEKS G P +TKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL QAI TEG K VAAG N M+++ GI   ++AVI++L++ A      +EI QV TISAN +  IG ++A AM+KVGKEGVITV +  +M   L+ V GM+  RGY+SPYFVTDP+  +  +++P
Sbjct:    4 KDIKYGVKARESVLIGVNTLANAVKVTLGPKGRNVLIEKSFGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIYTEGVKLVAAGGNPMEIKRGIDKGVEAVIAELRNIATPTKEQKEIAQVGTISANSDETIGNIIAEAMDKVGKEGVITVEEAKSMETTLDVVEGMQFDRGYLSPYFVTDPERMEVIMDDP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACIBS2.089e-6054.6360 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBC2.089e-6054.6360 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB52.089e-6054.6360 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB32.089e-6054.6360 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH603_RHILO2.089e-6054.4260 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH60_MAGSM2.729e-6052.5360 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
CH60_KLEPN2.729e-6055.0960 kDa chaperonin OS=Klebsiella pneumoniae GN=groL... [more]
CH60_GEMAT2.729e-6055.3060 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_FLAPJ2.729e-6055.5060 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_DESPS2.729e-6054.8860 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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