FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH606_BRAJA (60 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN=groL6 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 119/215 (55.35%), Postives = 163/215 (75.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ F V AR  ML+GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +  AAGDGTT ATVL QAI+ EG KSVAAG+N MDL+ GI +A++AV++DL   ++ +++ +EI QV TISANG+ EIG+ LA AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E+++
Sbjct:    3 AKEVKFSVDARDKMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_BRASO (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ORS278) GN=groL3 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 119/215 (55.35%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV  +A AVKVT+GPKGRNV+IEKS G P++TKDGVTVA  IE  DK +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ AVI D++ RA+ +++  E+ QV TISANG+  IG+++A+AM+KVG EGVITV +  ++  E++ V GMK  RGY+SPYFVT+ +    EL++
Sbjct:    3 AKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDTAVAAVIKDIEKRAKPVASSAEVAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTAELDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURPS (60 kDa chaperonin 2 OS=Burkholderia pseudomallei GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F  GARA +++GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+  P+ Q   L+ P
Sbjct:    3 AKEIIFHDGARAKLVEGVNLLANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINHPERQLAVLDEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURP6 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 668) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F  GARA +++GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+  P+ Q   L+ P
Sbjct:    3 AKEIIFHDGARAKLVEGVNLLANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINHPERQLAVLDEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURP1 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1710b) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F  GARA +++GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+  P+ Q   L+ P
Sbjct:    3 AKEIIFHDGARAKLVEGVNLLANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINHPERQLAVLDEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURP0 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1106a) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F  GARA +++GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+  P+ Q   L+ P
Sbjct:    3 AKEIIFHDGARAKLVEGVNLLANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINHPERQLAVLDEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.309e-62
Identity = 119/215 (55.35%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV  +A AVKVT+GPKGRNV+IEKS G P++TKDGVTVA  IE  DK +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ AVI D++ RA+ +++  E+ QV TISANG+  IG+++A+AM+KVG EGVITV +  ++  E++ V GMK  RGY+SPYFVT+ +    EL++
Sbjct:    3 AKDVKFAGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDTAVAAVIKDIEKRAKPVASSAEVAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTAELDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_WIGBR (60 kDa chaperonin OS=Wigglesworthia glossinidia brevipalpis GN=groL PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 117/216 (54.17%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ ML+GV+ +A+AVKVT+GPKGRNV+++KS G+P +TKDGV+VA  +E  DK +++GA ++K+VA   N AAGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A+   +++LK  +   S  + I QV TISAN ++ +G L+A AMEKVGKEGVITV +G+ + +EL+ V GM+  RGY+SPYFV  P+ +  EL+NP
Sbjct:    3 AKDVKFGNDARSKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGSPMITKDGVSVAREVELEDKFENMGAQMLKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIGAVAELKKLSVPCSDSKSIAQVGTISANADKTVGTLIAEAMEKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPEARSVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PHOLL (60 kDa chaperonin OS=Photorhabdus luminescens subsp. laumondii GN=groL PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL Q+I+TEG K+VAAG+N MDL+ GI  A+ A +++LK  +   S    I QV TISAN +  +G+L+A AM+KVGKEGVITV +G  + +EL+ V GM+  RGY+SPYF+  P+    ELENP
Sbjct:    3 AKDVKFGSDARVKMLRGVNILADAVKVTLGPKGRNVVLDKSFGAPAITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGIDKAVVAAVAELKKLSVPCSDSISIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEEGTGLEDELDVVEGMQFDRGYLSPYFINKPENGSVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_LEIMA (Chaperonin HSP60, mitochondrial OS=Leishmania major GN=HSP60 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 129/235 (54.89%), Postives = 164/235 (69.79%), Query Frame = 3
Query:   21 PRCKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            PRC K  YG          KDI +G+ AR A+L GV  + +AV VT+GPKGRNVI+E     PK+TKDGVTVA SIEF D  +++GANLV+QVAG TN  AGDGTT ATVL+ AI  EG +SVA+G N MDL+ GI +A   V+  L  +++ +++  EITQVA ISAN ++EIG L+  AM++VGK+GVIT  +G ++  ELE V GM   RGY SPYFVT+ K Q+CELEN L
Sbjct:    7 PRCVK--YGST-------PKDIRYGMEARNALLAGVENLVKAVGVTLGPKGRNVILEMPYACPKITKDGVTVAKSIEFEDSFENLGANLVRQVAGLTNDNAGDGTTTATVLSGAIFKEGFRSVASGTNPMDLKRGIDLACREVLISLAEQSRPVTSKSEITQVAMISANMDQEIGSLIGDAMQQVGKDGVITTQEGRSLNTELELVEGMSFERGYTSPYFVTNTKAQRCELENAL 232          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH606_BRAJA1.309e-6255.3560 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN... [more]
CH603_BRASO1.309e-6255.3560 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_BURPS1.309e-6256.0260 kDa chaperonin 2 OS=Burkholderia pseudomallei G... [more]
CH602_BURP61.309e-6256.0260 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURP11.309e-6256.0260 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURP01.309e-6256.0260 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH601_BRASB1.309e-6255.3560 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]
CH60_WIGBR1.709e-6254.1760 kDa chaperonin OS=Wigglesworthia glossinidia br... [more]
CH60_PHOLL1.709e-6255.5660 kDa chaperonin OS=Photorhabdus luminescens subs... [more]
CH60_LEIMA1.709e-6254.89Chaperonin HSP60, mitochondrial OS=Leishmania majo... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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