FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_CHRSD (60 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groL PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 121/216 (56.02%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK I F   AR  M +GV+ +A+AVKVT+GPKGRNV++EKS G+P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+TEG K V AG+N MDL+ GI  A+DA + +++S +   +  + I QV TISANG++ IGE++A AM+KVGKEGVITV +G    +ELE V GM+  RGY+SPYFVT+  T   ELE+P
Sbjct:    3 AKQIKFSDDARKRMARGVNVLADAVKVTLGPKGRNVVLEKSFGSPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQSIVTEGMKGVTAGMNPMDLKRGIDQAVDAAVKEIQSLSVPCTDAKAIAQVGTISANGDKRIGEIIADAMQKVGKEGVITVDEGRGFEDELEVVEGMQFDRGYLSPYFVTNQDTMMVELEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHOPA (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 119/215 (55.35%), Postives = 163/215 (75.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +  AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +A++AV++DL   ++ +++ +EI QV TISANG+ EIG+ LA AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E ++
Sbjct:    3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKDIELDDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.709e-62
Identity = 120/215 (55.81%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +  AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +  AAGDGTT ATVL  AI+ EG KSVAAG+N MDL+ GI +A++AV++DL   ++ +++ EEI QV TIS+NG+ EIG+ LA AM+KVG EGVITV +  ++  ELE V GM+  RGYISPYFVT+    + E+E+
Sbjct:    3 AKEVKFGVDARDRMLRGVEILNNAVKVTLGPKGRNVVLDKSYGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVKEGAKSVAAGMNPMDLKRGIDLAVEAVVADLVRNSKKVTSNEEIAQVGTISSNGDTEIGKFLADAMKKVGNEGVITVEEAKSLETELEIVEGMQFDRGYISPYFVTNADKMRVEMED 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RALSO (60 kDa chaperonin OS=Ralstonia solanacearum GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 119/216 (55.09%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VAAG+N MDL+ GI  A+ A + +LK  ++  +T +EI QV  ISAN +  IG  +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P+ Q  +L+NP
Sbjct:    3 AKDVVFGDAARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVAAGMNPMDLKRGIDKAVAAAVEELKKISKPTTTSKEIAQVGAISANSDESIGARIAEAMDKVGKEGVITVEDGKSLEDELDVVEGMQFDRGYLSPYFINNPEKQVVQLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEPG (60 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 123/217 (56.68%), Postives = 157/217 (72.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKD+ FG  AR  ML GV+ +A+AVK T+GPKGRNV++ KS G P +TKDGV+VA  IE +D  +++GA LVK+VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  AV+++LK+ ++  +  + I QV TISAN +  IG ++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYFV  P T   ELE PL
Sbjct:    3 AKDVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLAKSFGAPTITKDGVSVAKEIELKDAFENMGAQLVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATAAVVAELKNLSKPCADSKAIAQVGTISANSDDSIGNIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMVAELEGPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BLOPB (60 kDa chaperonin OS=Blochmannia pennsylvanicus (strain BPEN) GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 119/216 (55.09%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N +AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A+ A + +LK  +   S P+ I QV TISAN +  +G+L+A+AM+KVGKEGVITV +G+ + +EL+ V GM+  RGY+SPYFV  P++   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDSAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVVAAVEELKKLSVPCSDPKAIAQVGTISANSDETVGKLIAQAMDKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPESGTVELEHP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 119/216 (55.09%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N +AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A+ A + +LK  +   S P+ I QV TISAN +  +G+L+A+AM+KVGKEGVITV +G+ + +EL+ V GM+  RGY+SPYFV  P++   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDSAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVVAAVEELKKLSVPCSDPKAIAQVGTISANSDETVGKLIAQAMDKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPESGTVELEHP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 119/216 (55.09%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ F V AR  ML+GV  +A AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA +V++VA  T+  AGDGTT ATVL QAI+ EG K+V +G+N MDL+ GI +A+ A++ +LK+ A+ IS   EI QV TISANG+ EIG  LA A++KVG +GVITV +  T   ELE V GM+  RGY+SPYFVT+    + E E+P
Sbjct:    3 AKEVKFSVEAREKMLRGVDILANAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIVKEGAKAVTSGMNPMDLKRGIDLAVSAIVEELKANARKISNNAEIAQVGTISANGDAEIGRFLAEAVQKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_BURCH (60 kDa chaperonin 3 OS=Burkholderia cenocepacia (strain HI2424) GN=groL3 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 120/217 (55.30%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKD+ F  GAR  +++GV+ +A+AVKVT+GPKGRNV+IE+  G P +TKDGV+VA  IE +D+ +++GA +VKQVA  T   AGDGTT ATVL QAI+ EG K VAAG+N MDL+ GI  A+ AV+ +L+  ++ IST +EI QV  ISAN +  IG+++A AMEKVGK+GVITV DG ++ NEL+ V GM+  RGY+SPYF+ DP  Q   L++ L
Sbjct:    3 AKDVKFRDGARQQIVKGVNVLADAVKVTLGPKGRNVVIERGFGAPVITKDGVSVAKEIELKDRFENMGAQIVKQVASKTADVAGDGTTTATVLAQAIVQEGMKHVAAGMNPMDLKRGIDKAVGAVLDELRKLSRPISTHKEIAQVGAISANSDEAIGKIIADAMEKVGKDGVITVEDGKSLENELDVVEGMQFDRGYVSPYFINDPAKQAAYLDDAL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.232e-62
Identity = 120/216 (55.56%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   AR  ML+GV  +A AVK T+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA +V++VA  T+  AGDGTT ATVL QAI+ EG K+V +G+N MDL+ GI +A+ A++++LK+ A+ IS   EI QV TISANG+ EIG  LA AMEKVG +GVITV +  T   ELE V GM+  RGY+SPYFVT+    + E E+P
Sbjct:    3 AKEIKFSTEAREKMLRGVDILANAVKATLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIVKEGAKAVTSGMNPMDLKRGIDLAVAAIVAELKANARKISNNSEIAQVGTISANGDAEIGRFLAEAMEKVGNDGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CHRSD1.709e-6256.0260 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH602_RHOPA1.709e-6255.3560 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_NITHX1.709e-6255.8160 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH60_RALSO2.232e-6255.0960 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH60_PSEPG2.232e-6256.6860 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH60_BLOPB2.232e-6255.0960 kDa chaperonin OS=Blochmannia pennsylvanicus (s... [more]
CH60_BLOFL2.232e-6255.0960 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH604_RHIEC2.232e-6255.0960 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH603_BURCH2.232e-6255.3060 kDa chaperonin 3 OS=Burkholderia cenocepacia (s... [more]
CH602_RHILE2.232e-6255.5660 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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