FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 120/217 (55.30%), Postives = 160/217 (73.73%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKD+ F   AR+ +++GV+ +A+AVKVT+GPKGRNV+IE+S G P +TKDGV+VA  IE +D+ +++GA +VKQVA  T   AGDGTT ATVL Q+I+ EG K VAAG+N MDL+ GI  A+ AV+ +L   ++ I T  EI QV  ISAN +  IG+++A AM+KVGKEGVITV DG ++ NELE V GM+  RGY+SPYF+ DP  Q   L++PL
Sbjct:    3 AKDVKFHDSARSRIVKGVNVLADAVKVTLGPKGRNVLIERSFGAPTITKDGVSVAKEIELKDRFENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKHVAAGMNPMDLKRGIDKAVAAVLDELHRLSKPIKTSREIAQVGAISANADEAIGKIIADAMDKVGKEGVITVEDGKSLENELEVVEGMQFDRGYLSPYFINDPDKQVAHLDDPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURTA (60 kDa chaperonin 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 120/216 (55.56%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F  GAR  +++GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+ +P  Q   L+ P
Sbjct:    3 AKEIIFHDGARTKLVEGVNLLANAVKVTLGPKGRNVVLERSFGSPVVTKDGVSVAKEIELADKVQNIGAQLVKEVASKTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVEELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINNPDRQLAVLDEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_AZOSB (60 kDa chaperonin 2 OS=Azoarcus sp. (strain BH72) GN=groL2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 119/216 (55.09%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + FG  ARA ++QGV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK+VA  T   AGDGTT ATVL QAI+ EG K VAAG N  DL+ GI  A+ A++ +LK+ ++  +T +EI QV  ISAN + +IG+++A+A++KVGKEGVITV DG ++ NEL+ V G++  RGY+SPYF+ +P  Q  EL+NP
Sbjct:    3 AKQVLFGDDARAKVVQGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKEVASKTADNAGDGTTTATVLAQAIVREGFKFVAAGFNPADLKRGIDKAVAAIVDELKALSKPTTTSKEIAQVGAISANSDADIGDIIAKAIDKVGKEGVITVEDGKSLNNELDVVEGLQFDRGYLSPYFINNPDKQVAELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURPS (60 kDa chaperonin 1 OS=Burkholderia pseudomallei GN=groL1 PE=3 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 119/216 (55.09%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   LENP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURP6 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 668) GN=groL1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 119/216 (55.09%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   LENP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURP1 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1710b) GN=groL1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 119/216 (55.09%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   LENP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 119/216 (55.09%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   LENP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RHOMR (60 kDa chaperonin OS=Rhodothermus marinus GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 123/215 (57.21%), Postives = 154/215 (71.63%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK I F   AR A+ +GV ++A+AVKVT+GPKGRNVIIEK  G P VTKDGVTVA  IE  DK ++VGA +VK+VA  T+  AGDGTT ATVL QAILT G KSV AG N MDL+ GI  A++ V+++L+  +Q +     I QVATISANG++ IG+L+A A EKVGK+GVITV +       LE V GM+  RGY+SPYFVT+P T +  LE+
Sbjct:    3 AKQITFNADARMALKRGVDKLADAVKVTLGPKGRNVIIEKKFGAPTVTKDGVTVAKEIELEDKLENVGAQMVKEVASKTSDVAGDGTTTATVLAQAILTAGLKSVTAGANPMDLKRGIDKAVEVVVAELRKMSQEVQDKNRIAQVATISANGDKAIGQLIADAFEKVGKDGVITVEEAKGTETTLEVVEGMQFDRGYLSPYFVTNPDTMEAVLED 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_JANSC (60 kDa chaperonin OS=Jannaschia sp. (strain CCS1) GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 119/218 (54.59%), Postives = 161/218 (73.85%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            +AKD+ F   AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QAI+ EG KSVAAG+N MDL+ GI +A+  VI++++  A+ ++  +E+ QV TISANGE EIG  +A AM+KVG +GVITV +   +  E + V GM+  RGY+SPYFVT+P     EL++ L
Sbjct:    1 MAKDVRFDTDARNRMLKGVNTLADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIIKEGLKSVAAGMNPMDLKRGIDLAVTKVIAEIQGSAREVADSDEVAQVGTISANGEAEIGRQIADAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNPDKMIAELDDCL 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCRM (60 kDa chaperonin OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD  FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+ + + +LK+ +   S  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + NELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDEKFGNEARIKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKNLSVPCSDSKAITQVGTISANADEKVGALIAEAMEKVGNDGVITVEEGTGLQNELEVVKGMQFDRGYLSPYFINKPETGVVELENP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BURXL3.808e-6255.3060 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]
CH602_BURTA3.808e-6255.5660 kDa chaperonin 2 OS=Burkholderia thailandensis ... [more]
CH602_AZOSB3.808e-6255.0960 kDa chaperonin 2 OS=Azoarcus sp. (strain BH72) ... [more]
CH601_BURPS3.808e-6255.0960 kDa chaperonin 1 OS=Burkholderia pseudomallei G... [more]
CH601_BURP63.808e-6255.0960 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP13.808e-6255.0960 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP03.808e-6255.0960 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH60_RHOMR4.973e-6257.2160 kDa chaperonin OS=Rhodothermus marinus GN=groL ... [more]
CH60_JANSC4.973e-6254.5960 kDa chaperonin OS=Jannaschia sp. (strain CCS1) ... [more]
CH60_BUCRM4.973e-6255.5660 kDa chaperonin OS=Buchnera aphidicola subsp. Rh... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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