FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCCC (60 kDa chaperonin OS=Buchnera aphidicola subsp. Cinara cedri GN=groL PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 119/216 (55.09%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+   + +LK  +   +  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + NELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDVKFGNEARIKMLHGVNVLADAVKVTLGPKGRNVVLDKSFGPPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIDAVDELKKLSVPCADSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQNELEVVKGMQFDRGYLSPYFINQPETGLVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 118/215 (54.88%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +  AAGDGTT ATVL  AI+ EG K+VAAG+N MDL+ GI +A++AV++DL   ++ +++ EEI QV TISANG+ EIG+ L+ AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E ++
Sbjct:    3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKDIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVREGAKAVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFLSDAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURS3 (60 kDa chaperonin 1 OS=Burkholderia sp. (strain 383) GN=groL1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.973e-62
Identity = 121/216 (56.02%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   ARA + +GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+ +P  Q  E+E+P
Sbjct:    3 AKEIIFSDVARAKLTEGVNILANAVKVTLGPKGRNVVLERSFGAPVVTKDGVSVAKEIELADKLQNIGAQLVKEVASRTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDELKKISRPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINNPDKQIAEIESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEST (60 kDa chaperonin OS=Pseudomonas stutzeri GN=groL PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/217 (54.84%), Postives = 159/217 (73.27%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE +D+ +++GA LVK VA   N  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  A++++LK+ A+  +  + I QV TISAN +  IG+++A AME+VGKEGVITV +G+ + NEL  V GM+  RGY+SPYF+  P T   EL++PL
Sbjct:    3 AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELKDRFENMGAQLVKDVASKANDEAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATIAIVAELKNLAKPCTDSKAIAQVGTISANSDSSIGDIIAEAMERVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELDSPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIGO (60 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 115/216 (53.24%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K+V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGIKAVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_HAEDU (60 kDa chaperonin OS=Haemophilus ducreyi GN=groL PE=3 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 117/215 (54.42%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   78 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            KD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++K+ G P +TKDGV+VA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL Q+I++EG ++VAAG+N MDL+ GI  A+ AV+ +LK+ ++   T +EI QV TISAN +  +G+L+A+AMEKVGKEGVITV DG  + + L+ V GM+  RGY+SPYF+  P+    EL+NP
Sbjct:    4 KDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDKAYGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDVAGDGTTTATVLAQSIVSEGLRAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDETVGKLIAQAMEKVGKEGVITVEDGTGLDDALDVVEGMQFDRGYLSPYFINKPEAGTVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCAT (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=groL PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/216 (55.09%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+ + + +LK  +   S  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + +ELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDVKFGNEARIKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKHLSVPCSDSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKPETGIVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCAI (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=groL PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/216 (55.09%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+ + + +LK  +   S  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + +ELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDVKFGNEARIKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKHLSVPCSDSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKPETGIVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCA5 (60 kDa chaperonin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=groL PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/216 (55.09%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+ + + +LK  +   S  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + +ELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDVKFGNEARIKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKHLSVPCSDSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKPETGIVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/215 (55.35%), Postives = 158/215 (73.49%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGVTVA  IE  DK +++GA +V++VA  TN  AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI +A+  V++ L   A+ I T EE+ QV TISANG+  +G+++A AM+KVG EGVITV +  T   ELE V GM+  RGY+SPYFVT+      +LE+
Sbjct:    3 AKDVKFSRDARERMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSEVVAALGKAAKKIKTSEEVAQVGTISANGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLED 217          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BUCCC4.973e-6255.0960 kDa chaperonin OS=Buchnera aphidicola subsp. Ci... [more]
CH602_RHOP54.973e-6254.8860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH601_BURS34.973e-6256.0260 kDa chaperonin 1 OS=Burkholderia sp. (strain 38... [more]
CH60_PSEST6.495e-6254.8460 kDa chaperonin OS=Pseudomonas stutzeri GN=groL ... [more]
CH60_NEIGO6.495e-6253.2460 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL... [more]
CH60_HAEDU6.495e-6254.4260 kDa chaperonin OS=Haemophilus ducreyi GN=groL P... [more]
CH60_BUCAT6.495e-6255.0960 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH60_BUCAI6.495e-6255.0960 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH60_BUCA56.495e-6255.0960 kDa chaperonin OS=Buchnera aphidicola subsp. Ac... [more]
CH604_RHILO6.495e-6255.3560 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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