FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_RHOFD (60 kDa chaperonin 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=groL1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.495e-62
Identity = 119/216 (55.09%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++++S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL QAI+ EG K V AG+N MDL+ GI  A+ A+I +LK  ++  +T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P+ Q   L+NP
Sbjct:    3 AKDVIFGGEARARMVEGVNILANAVKVTLGPKGRNVVLDRSFGAPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDIAGDGTTTATVLAQAIVHEGMKYVTAGMNPMDLKRGIDKAVHALIVELKKASKATTTSKEIAQVGSISANSDEAIGKIIADAMDKVGKEGVITVEDGKSLDSELDVVEGMQFDRGYLSPYFINNPEKQAALLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_METFK (60 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groL PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 120/216 (55.56%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + FG  ARA ++ GV+ +A AVKVT+GPKGRNV++E+S G+P VTKDGV+VA  IE  DK +++GA LVK+VA  TN  AGDGTT ATVL QAI+ EG K VAAG N  DL+ GI  A+  +++++K+ A+  +T +EI QV +ISAN + +IG+++A AM+KVGKEGVITV DG+ + NEL+ V GM+  RGY+SPYF+ +P+ Q   LENP
Sbjct:    3 AKQVIFGDDARAKIVNGVNILANAVKVTLGPKGRNVVLERSFGSPTVTKDGVSVAKEIELSDKLENMGAQLVKEVASKTNDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGIDKAVAEIVNEIKAIAKPTTTSKEIAQVGSISANSDADIGQIIADAMDKVGKEGVITVEDGSGLQNELDVVEGMQFDRGYLSPYFINNPERQIALLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_IDILO (60 kDa chaperonin OS=Idiomarina loihiensis GN=groL PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 117/216 (54.17%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR  ML+GV+ +A++VKVT+GPKGRNV+++KS G+P +TKDGV+VA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL QAI+ EG KSVAAG+N MDL+ GI  A+ A + +LK  +Q  +  + I QVATISAN +  IGE++A+AM+KVG+EGVITV +G  + +EL+ V GM+  RGY+SPYF+ + ++   EL+NP
Sbjct:    3 AKEVKFGNTARQKMLKGVNILADSVKVTLGPKGRNVVLDKSYGSPVITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAIVNEGLKSVAAGMNPMDLKRGIDKAVIAAVEELKKISQPCADSKAIAQVATISANADHTIGEIIAQAMDKVGQEGVITVEEGQALTDELDVVEGMQFDRGYLSPYFINNQESGSVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHOP2 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 118/215 (54.88%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +   AGDGTT ATVL  AI+ EG KSVAAG+N MDL+ GI +A++AV++DL   ++ +++ +EI QV TISANG+ EIG+ LA AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E ++
Sbjct:    3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADLAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 118/215 (54.88%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ F   AR  ML+GV  +A AV+VT+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA ++++VA  T+  AGDGTT ATVL QAI+ EG K+VA+G+N MDL+ GI +A++A++ +L++ A+ +S   EI QVATISANG+ EIG  LA AMEKVG EGVITV +  T   ELE V GM+  RGY+SPYF+T+ +  + ELE+
Sbjct:    3 AKEVKFTSDARDRMLRGVDIMANAVRVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASRTSDIAGDGTTTATVLAQAIVREGAKAVASGMNPMDLKRGIDLAVEAIVKELRNNARKVSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTAEIELEVVEGMEFDRGYLSPYFITNQEKMRVELED 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 117/216 (54.17%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M+ GV+ +A+AVKVT+GPKGRNV++++S G P +TKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL QAI+ EG K VAAG+N MDL+ GI  A+ +++ ++   A+  +T +EI QV +ISAN + +IGE++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ +   Q   L+NP
Sbjct:    3 AKDVKFGDSARSKMVAGVNILADAVKVTLGPKGRNVVLDRSFGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIVQEGMKFVAAGMNPMDLKRGIDKAVVSLVGEIAKIAKPCATSKEIAQVGSISANSDSDIGEIIANAMEKVGKEGVITVEDGKSLNNELDVVEGMQFDRGYLSPYFINNQDKQIAALDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURS3 (60 kDa chaperonin 2 OS=Burkholderia sp. (strain 383) GN=groL2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 117/216 (54.17%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV +ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P+ Q   L+NP
Sbjct:    3 AKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDTSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPEKQVAVLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURCM (60 kDa chaperonin 2 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL2 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 121/216 (56.02%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   AR  + +GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ A +  LK+ ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+ +P  Q  E+ENP
Sbjct:    3 AKEIIFSDVARTKLTEGVNILANAVKVTLGPKGRNVVLERSFGAPVVTKDGVSVAKEIELADKLQNIGAQLVKEVASRTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVAAAVDALKTISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINNPDKQIAEIENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 118/215 (54.88%), Postives = 161/215 (74.88%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +   AGDGTT ATVL  AI+ EG KSVAAG+N MDL+ GI +A++AV++DL   ++ +++ EEI QV TISANG+ EIG+ L+ AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E ++
Sbjct:    3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADLAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFLSDAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_BURCM (60 kDa chaperonin 1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.483e-62
Identity = 117/216 (54.17%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV +ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P+ Q   L+NP
Sbjct:    3 AKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDTSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPEKQVAVLDNP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_RHOFD6.495e-6255.0960 kDa chaperonin 1 OS=Rhodoferax ferrireducens (s... [more]
CH60_METFK8.483e-6255.5660 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH60_IDILO8.483e-6254.1760 kDa chaperonin OS=Idiomarina loihiensis GN=groL... [more]
CH602_RHOP28.483e-6254.8860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_RHIME8.483e-6254.8860 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]
CH602_CHRVO8.483e-6254.1760 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH602_BURS38.483e-6254.1760 kDa chaperonin 2 OS=Burkholderia sp. (strain 38... [more]
CH602_BURCM8.483e-6256.0260 kDa chaperonin 2 OS=Burkholderia ambifaria (str... [more]
CH601_RHOPB8.483e-6254.8860 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_BURCM8.483e-6254.1760 kDa chaperonin 1 OS=Burkholderia ambifaria (str... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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