FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEF5 (60 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 120/217 (55.30%), Postives = 156/217 (71.89%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNVIIEKS G P +TKDGV+VA  IE +D+ +++GA LVK VA   N  AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A  A++ +LK  ++  +  + I QV TISAN +  IG+++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYF+  P T   EL+ PL
Sbjct:    3 AKEVKFGDSARKKMLTGVNVLADAVKATLGPKGRNVIIEKSFGAPTITKDGVSVAKEIELKDRFENMGAQLVKDVASRANDDAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKATIAIVKELKGLSKPCADSKAIAQVGTISANSDNSIGDIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFINKPDTMVAELDGPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NITEU (60 kDa chaperonin OS=Nitrosomonas europaea GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 117/216 (54.17%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR A++ GV+ +A+AVKVT+GPKGRNV++E+S G P +TKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG + VAAG+N MDL+ GI+ A+   + +LK  ++  ST +EI QV +ISAN + EIG ++A AM+KVGKEGVITV DG+ + NEL+ V GM+  RGY+SPYFV+    Q   LE+P
Sbjct:    3 AKEVRFGDSARQAVISGVNVLADAVKVTLGPKGRNVVLERSYGAPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDTAGDGTTTATVLAQSIVKEGMRYVAAGMNPMDLKRGIEKAVTGAVEELKKLSKPCSTSKEIAQVGSISANSDTEIGRIIAEAMDKVGKEGVITVEDGSGLENELDVVEGMQFDRGYLSPYFVSSADKQIAALESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIMB (60 kDa chaperonin OS=Neisseria meningitidis serogroup B GN=groL PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVDELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIM0 (60 kDa chaperonin OS=Neisseria meningitidis serogroup C (strain 053442) GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAALDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCBP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=groL PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 118/216 (54.63%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L QAI+ EG K+VAAG+N MDL+ GI  A+ + + +L+  +   +  + ITQV TISAN + ++G L+A AM+KVGK+GVITV +G  + +ELE V GM+  RGY+SPYF+  P+T   ELENP
Sbjct:    3 AKDVKFGNEARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELRIMSVPCADSKAITQVGTISANADEKVGSLIADAMDKVGKDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKPETGIVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.108e-61
Identity = 118/215 (54.88%), Postives = 163/215 (75.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  M++GV  +A AVKVT+GPKGRNV+++KS G P++TKDGVTVA  IE  DK +++GA +V++VA  +  AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +A++AV++DL   ++ +++ EEI QV TISANG+ EIG+ L+ AM+KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E ++
Sbjct:    3 AKEVKFGVDARDRMMRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELDDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGGKAVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDVEIGKFLSDAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_XANCP (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 116/216 (53.70%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR  M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A + +LK+ ++  +  + I QV TISAN +  IG ++A AM+KVGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQSADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_XANCH (60 kDa chaperonin OS=Xanthomonas campestris pv. phaseoli GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 116/216 (53.70%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR  M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A + +LK+ ++  +  + I QV TISAN +  IG ++A AM+KVGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQSADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_XANCB (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain B100) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 116/216 (53.70%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR  M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A + +LK+ ++  +  + I QV TISAN +  IG ++A AM+KVGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQSADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_XANC8 (60 kDa chaperonin OS=Xanthomonas campestris pv. campestris (strain 8004) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 116/216 (53.70%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR  M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A + +LK+ ++  +  + I QV TISAN +  IG ++A AM+KVGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVIELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMQKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQSADLDDP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEF51.108e-6155.3060 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_NITEU1.108e-6154.1760 kDa chaperonin OS=Nitrosomonas europaea GN=groL... [more]
CH60_NEIMB1.108e-6153.2460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIM01.108e-6153.2460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_BUCBP1.108e-6154.6360 kDa chaperonin OS=Buchnera aphidicola subsp. Ba... [more]
CH601_RHOPS1.108e-6154.8860 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_XANCP1.447e-6153.7060 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANCH1.447e-6153.7060 kDa chaperonin OS=Xanthomonas campestris pv. ph... [more]
CH60_XANCB1.447e-6153.7060 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]
CH60_XANC81.447e-6153.7060 kDa chaperonin OS=Xanthomonas campestris pv. ca... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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