FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_SODGM (60 kDa chaperonin OS=Sodalis glossinidius (strain morsitans) GN=groL PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 120/216 (55.56%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A+ A + +LK  +   S  + I QV TISAN +  +G L+A AM KVGKEGVITV +G+ + +EL+ V GM+  RGY+SPYFV  P+T   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANADETVGTLIAEAMAKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPETGAVELESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_SODGL (60 kDa chaperonin OS=Sodalis glossinidius GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 120/216 (55.56%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI  A+ A + +LK  +   S  + I QV TISAN +  +G L+A AM KVGKEGVITV +G+ + +EL+ V GM+  RGY+SPYFV  P+T   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPVITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANADETVGTLIAEAMAKVGKEGVITVEEGSGLQDELDVVEGMQFDRGYLSPYFVNKPETGAVELESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIG2 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain NCCP11945) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_NEIG1 (60 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG   R  M+ GV+ +A AV+VT+GPKGRNV+++++ G P +TKDGVTVA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K V AG+N  DL+ GI  A+ A++ +LK+ A+   T +EI QV +ISAN + ++G ++A AMEKVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ D + Q   L+NP
Sbjct:    3 AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGMKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 119/217 (54.84%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            A+ I F    R A+L+GV+ +A+AVKVT+GPKGRNV+IEK+ G+P +TKDGVTVA  IE  DK +++GA LVK+VA  T+  AGDGTT ATVL QAI  +G K VAAG N M+++ GI  A++ ++++LKS ++ I   +EI QV TISAN ++ IG+++A+AMEKVGKEGVITV +   M   LE+V GM+  RGY+SPYFVTDP+  +  LEN +
Sbjct:    3 ARIIKFDQEGRNAILKGVNTLADAVKVTLGPKGRNVVIEKAFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDKAVETIVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAQAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLENAM 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            +AK I F    R A L+GV+ +A+AVKVT+GPKGRNV+IEKS G P +TKDGVTVA  IE  DK +++GA LVK+VA  T+  AGDGTT ATVL QAI  +G K VAAG N M+++ GI  A++ ++++LKS ++ I   +EI QV TISAN ++ IG+++A AMEKVGKEGVITV +   M   LE+V GM+  RGY+SPYFVTDP+  +  LEN
Sbjct:    1 MAKVIKFDQEGRNAFLKGVNTLADAVKVTLGPKGRNVVIEKSFGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGAKLVAAGHNPMEIKRGIDKAVETLVAELKSISKPIKDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEANLEN 216          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 117/216 (54.17%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV +ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   L+NP
Sbjct:    3 AKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.447e-61
Identity = 117/216 (54.17%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR+ M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A + +LK  ++  +T +EI QV +ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   L+NP
Sbjct:    3 AKDVVFGDSARSKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAVEELKKISKPCTTNKEIAQVGSISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLADELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SODGM1.447e-6155.5660 kDa chaperonin OS=Sodalis glossinidius (strain ... [more]
CH60_SODGL1.447e-6155.5660 kDa chaperonin OS=Sodalis glossinidius GN=groL ... [more]
CH60_NEIMF1.447e-6153.2460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA1.447e-6153.2460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIG21.447e-6153.2460 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_NEIG11.447e-6153.2460 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH60_GEOSL1.447e-6154.8460 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_GEOSF1.447e-6156.0260 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH60_BURVI1.447e-6154.1760 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURCE1.447e-6154.1760 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
back to top