FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_XANAC (60 kDa chaperonin OS=Xanthomonas axonopodis pv. citri GN=groL PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 116/216 (53.70%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR  M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A + +LK+ ++  +  + I QV TISAN +  IG ++A AM+KVGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARTRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASKTNDNAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDQAVKAAVVELKNISKPTTDDKAIAQVGTISANSDESIGNIIAEAMKKVGKEGVITVEEGSGLENELDVVEGMQFDRGYLSPYFINNQQSQSADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_HAHCH (60 kDa chaperonin OS=Hahella chejuensis (strain KCTC 2396) GN=groL PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 119/216 (55.09%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  M+ GV+ +A+AVKVT+GPKGRNV+++KS G P VTKDGV+VA  IE +DK +++GA +VK+VA  TN  AGDGTT ATVL QAIL EG KSVAAG+N MDL+ GI  A+ A + ++K+ ++     + I QV TISAN +  IG ++A AMEKVGKEGVITV +G+ + +EL+ V GM+  RGY+S YFV +  +   ELE+P
Sbjct:    3 AKDVKFGDSARKRMVAGVNTLADAVKVTLGPKGRNVVLDKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTNDEAGDGTTTATVLAQAILNEGLKSVAAGMNPMDLKRGIDKAVIAAVKEIKNISRPCEDSKSIAQVGTISANSDERIGNIIAEAMEKVGKEGVITVEEGSGLEDELDVVEGMQFDRGYLSAYFVNNQDSMSAELEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_DICNV (60 kDa chaperonin OS=Dichelobacter nodosus (strain VCS1703A) GN=groL PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR  ML+GV+ +A+AVKVT+GPKGRNVI++KS G P VTKDGV+VA  IE  DK +++GA LVK+VA  TN AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+   +  L + ++  S  + I QV TISAN +  +G  +A AMEKVGKEGVITV +G  + + LE V GM+  RGY+SPYF+ + ++Q+ ELENP
Sbjct:    3 AKEVRFGEDARNKMLKGVNILADAVKVTLGPKGRNVILDKSFGTPTVTKDGVSVAKEIELADKFENMGAQLVKEVASQTNDAAGDGTTTATVLAQAIVVEGLKAVAAGMNPMDLKRGIDKAVAEAVKTLHAISKPCSDSKAIAQVGTISANSDETVGAKIAEAMEKVGKEGVITVEEGQGLEDSLEVVEGMQFDRGYLSPYFINNQQSQQVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 118/216 (54.63%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A I +L+  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   L+NP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVTAAIEELRKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 120/216 (55.56%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR  +L+GV  +A AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A++ V+ +L  +A+ I T  EI QV TISANG  EIG+++A AMEKVG EGVITV +  T   ELE V GM+  RGY+SPYFVT+      +L++P
Sbjct:    3 AKEVKFGREARERLLRGVDILANAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASKTNDIAGDGTTTATVLGQAIVQEGVKAVAAGMNPMDLKRGIDAAVEEVVGNLFKKAKKIQTSAEIAQVGTISANGAAEIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.890e-61
Identity = 122/218 (55.96%), Postives = 159/218 (72.94%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            +AKDI F V AR A+L+GV+ +A+AVKVT+GPKGRNV+IEKS G+P +TKDGVTVA  IE  +K +++GA +VK+VA  T+  AGDGTT ATVL QAI  EG K VAAG N MD++ GI  A+ A++++LK  A+     +EI QV TISANG+  IG ++A AMEKVGKEGVITV +   +   L+ V GM+  RGY+SPYFVTDP+  +  L + L
Sbjct:    1 MAKDILFDVRAREAILRGVNILADAVKVTLGPKGRNVVIEKSFGSPTITKDGVTVAKEIELENKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQAIFREGAKLVAAGHNPMDIKRGIDKAVGAIVAELKKLAKPTKDKKEIAQVGTISANGDETIGTIIADAMEKVGKEGVITVEEAKGLETTLDVVEGMQFDRGYLSPYFVTDPERMEAALNDAL 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 118/216 (54.63%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  ARA M++GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG K VA+G+N MDL+ GI  A+ A I +L+  ++  +T +EI QV  ISAN +  IG+ +A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   L+NP
Sbjct:    3 AKDVVFGDSARAKMVEGVNILANAVKVTLGPKGRNVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVAAAIEELRKISKPCTTNKEIAQVGAISANSDTSIGDRIAEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCTT (60 kDa chaperonin OS=Buchnera aphidicola subsp. Tuberolachnus salignus GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 118/216 (54.63%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  ARA ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++G  +VK+VA   N AAGDGTT ATVL Q+I+TEG K+VAAG+N MDL+ GI  A+ A + +L+  +   S  + I QV TISAN +  +G+L+A AM KVGKEGVITV +G  + +EL+ V GM+  RGY+SPYF+  P++   ELENP
Sbjct:    3 AKEVKFGNDARAKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGTQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELRKLSVPCSDSKAIAQVGTISANSDLTVGKLIAEAMGKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPESGAVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCPP (60 kDa chaperonin OS=Buchnera aphidicola subsp. Pterocomma populeum GN=groL PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 118/216 (54.63%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT AT+L Q+I+ EG K+VAAG+N MDL+ GI  A+ + + +LK+ +   S  + ITQV TISAN + ++G L+A AMEKVG +GVITV +G  + +ELE V GM+  RGY+SPYF+   +T   ELENP
Sbjct:    3 AKDVKFGNEARIKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKNLSVTCSDSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQDELEVVKGMQFDRGYLSPYFINKSETGIVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 118/215 (54.88%), Postives = 160/215 (74.42%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV  +A AVKVT+GPKGRNV+IE+S G  ++TKDGVTVA  IE  DK +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG KSVAAG+N MDL+ GI++A+ AVI DL  RA+ +++  EI QV TIS+NG+  IG+++A+AM+KVG EGVITV +  ++  E++ V GMK  RGY+SPYFVT+ +    E ++
Sbjct:    3 AKDVKFAGDARDRMLRGVDILANAVKVTLGPKGRNVLIERSFGAARITKDGVTVAKEIELEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIEIAVAAVIKDLVKRAKPVASSAEIAQVGTISSNGDAAIGKMIAQAMQKVGNEGVITVEENKSLTTEVDIVEGMKFDRGYLSPYFVTNAEKMAVEFDD 217          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_XANAC1.890e-6153.7060 kDa chaperonin OS=Xanthomonas axonopodis pv. ci... [more]
CH60_HAHCH1.890e-6155.0960 kDa chaperonin OS=Hahella chejuensis (strain KC... [more]
CH60_DICNV1.890e-6156.0260 kDa chaperonin OS=Dichelobacter nodosus (strain... [more]
CH60_BURPP1.890e-6154.6360 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH60_BARQU1.890e-6155.5660 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]
CH602_MYXXD1.890e-6155.9660 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH60_BURP82.468e-6154.6360 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH60_BUCTT2.468e-6154.6360 kDa chaperonin OS=Buchnera aphidicola subsp. Tu... [more]
CH60_BUCPP2.468e-6154.6360 kDa chaperonin OS=Buchnera aphidicola subsp. Pt... [more]
CH602_RHOPB2.468e-6154.8860 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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