FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 119/216 (55.09%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +KD+ F   ARA +L G+  +A+AVKVT+GPKGRNV+I+KS G P++TKDGVTVA  IE  DK +++GA L+++VA  TN  AGDGTT ATVL Q+I+ EG K+VAAG N  D++ GI  A  AVI +L++R + I+T EE  QVATISANGE EIG +++ A++KVGK+GVITV +      EL+ V G++  RGYISPYFVT+ +    +LENP
Sbjct:    3 SKDVKFAGDARARLLSGIDTLADAVKVTLGPKGRNVVIDKSFGAPRITKDGVTVAKEIELSDKFENLGAQLLREVASKTNDLAGDGTTTATVLAQSIVREGLKAVAAGFNPQDVKRGIDHATTAVIEELRTRTRPIATREETAQVATISANGEVEIGRIISEAVQKVGKDGVITVEEAKGFETELDVVEGLQFDRGYISPYFVTNSEKLIADLENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_RHOP5 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL1 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.468e-61
Identity = 114/215 (53.02%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AKD+ F   AR  ML+GV  +A AVKVT+GPKGRNV+IE+S G P++TKDGVTVA  I+  DK +++GA ++++VA  TN  AGDGTT ATVL Q+I+ EG K+VAAG+N MDL+ GI++A+ AV+ D++ RA+ +++  EI QV TIS+NG+  IG+++A+AM+KVG EGVITV +  ++  E++ V GMK  RGY+SPYFVT+ +    E ++
Sbjct:    3 AKDVKFSQDARDRMLRGVDILANAVKVTLGPKGRNVLIERSFGAPRITKDGVTVAKEIQLEDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQSIVREGAKAVAAGMNPMDLKRGIEIAVAAVVKDIEKRAKPVASSAEIAQVGTISSNGDAAIGKMIAQAMQKVGNEGVITVEENKSLTTEVDIVEGMKFDRGYLSPYFVTNAEKMAVEFDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_TREPR (60 kDa chaperonin OS=Tremblaya princeps GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.224e-61
Identity = 113/216 (52.31%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  +++GV+ + +AVKVT+GPKGRNV++E+S G+P VTKDGVTVA  IE RD+ +++GA +VK+VA  T+  AGDGTT ATVL Q+I+ EG + VA+G+N MD++ GI  A+ + + +LK  ++  +T +EI QV ++SAN +R +GE++A AM KVGKEGVITV DG ++ +ELE V GM+  RGY+SPYF+ +P  Q   L++P
Sbjct:    3 AKDVIFGDCARLRLMEGVNTLTDAVKVTLGPKGRNVVLERSYGSPAVTKDGVTVAKDIELRDRLQNMGAQMVKEVAAKTSDNAGDGTTTATVLAQSIVREGMRYVASGVNPMDIKRGIDQAVSSAVMELKKISRPCTTGKEIAQVGSVSANNDRTVGEMIAEAMNKVGKEGVITVEDGKSLADELEVVEGMQFDRGYLSPYFINNPDRQVAVLDSP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_STRMK (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.224e-61
Identity = 115/216 (53.24%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR+ M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A +++LK+ ++  +  + I QV TISAN +  IG+++A AM++VGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVSAAVAELKNISKPTADDKAIAQVGTISANSDESIGQIIADAMKEVGKEGVITVEEGSGLDNELDVVKGMQFDRGYLSPYFINNQQSQTADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_STRM5 (60 kDa chaperonin OS=Stenotrophomonas maltophilia (strain R551-3) GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.224e-61
Identity = 116/216 (53.70%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKDI FG  AR+ M++GV+ +A AVK T+GPKGRNV++EKS G P +TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A +++LKS ++  +  + I QV TISAN +  IG+++A AM++VGKEGVITV +G+ + NEL+ V GM+  RGY+SPYF+ + ++Q  +L++P
Sbjct:    3 AKDIRFGEDARSRMVRGVNVLANAVKATLGPKGRNVVLEKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASRTNDDAGDGTTTATVLAQALIREGAKAVAAGMNPMDLKRGIDKAVVAAVNELKSISKPTADDKAIAQVGTISANSDESIGQIIADAMKEVGKEGVITVEEGSGLDNELDVVKGMQFDRGYLSPYFINNQQSQTADLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_STEMA (60 kDa chaperonin OS=Stenotrophomonas maltophilia GN=groL PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.224e-61
Identity = 118/216 (54.63%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+ +  K+VAAG+N MDL+ GI  A+   + +LK+ +   S  + I QV TISAN +  +G+L+A AM+KVGKEGVITV DG  + +EL+ V GM+  RGY+SPYF+  P+T   ELE+P
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIILKVMKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BURCH (60 kDa chaperonin 2 OS=Burkholderia cenocepacia (strain HI2424) GN=groL2 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.224e-61
Identity = 119/216 (55.09%), Postives = 162/216 (75.00%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   AR+ + +GV+ +A AVKVT+GPKGRNV++E+S G P VTKDGV+VA  IE  DK +++GA LVK+VA  T+ AAGDGTT ATVL QAI+ EG K VAAGLN +DL+ GI  A+ + + +LK  ++  +T +EI QVATISANGE  IG+ +A A+++VGKEGVITV DG ++ +EL+ V G++  RGY+SPYF+ +P  Q  E+E+P
Sbjct:    3 AKEILFSDIARSKLTEGVNILANAVKVTLGPKGRNVVLERSFGAPVVTKDGVSVAKEIELADKLQNIGAQLVKEVASRTSDAAGDGTTTATVLAQAIVREGQKYVAAGLNPLDLKRGIDKAVASAVEELKKISKPTTTSKEIAQVATISANGEESIGQRIAEAIDRVGKEGVITVEDGKSLADELDVVEGLQFDRGYLSPYFINNPDKQIAEIESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_THICR (60 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.210e-61
Identity = 116/217 (53.46%), Postives = 160/217 (73.73%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AKD+  G+ AR  M++G++ +A+AVKVT+GPKGRNV++EKS G P VTKDGV+VA  IE  DK  ++GA +VK+V+  TN  AGDGTT ATVL Q+I+ EG KSVAAG+N MDL  GI  A++AV+ +++  +   +T E I QV TISAN +  +G+++A AMEKV  EGVITV +G+++ +EL  V GM+  RGY+SPYFVT+ +    EL+NP
Sbjct:    1 MAKDVRLGLDAREKMVEGINVLADAVKVTLGPKGRNVVLEKSFGAPTVTKDGVSVAREIELEDKFMNMGAQMVKEVSSQTNDVAGDGTTTATVLAQSIVREGMKSVAAGMNPMDLNRGIHKAVEAVVKEIQKMSVPCTTTESIAQVGTISANSDSAVGKMIAEAMEKVSTEGVITVEEGSSLHDELVVVEGMEFDRGYLSPYFVTNQEKMVAELDNP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.210e-61
Identity = 119/217 (54.84%), Postives = 156/217 (71.89%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKD+ F   AR  ML+GV+ +A+AVKVT+GPKGRNV++EKS G P++TKDGV+VA  IE  DK +++GA +VK+VA  TN  AGDGTT ATVL Q+I+ EG K VAAGLN MDL+ GI +A D V+  +K+ A+ +   +E+ QV TISANGE EIG  +A AM+KVG +GVITV +   +  E + V GM+  RGY+SPYFVT+      ELE+ L
Sbjct:    3 AKDVKFDTDARNRMLKGVNTLADAVKVTLGPKGRNVVLEKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQSIVREGLKQVAAGLNPMDLKRGIDLATDKVVEAIKAMAREVKDSDEVAQVGTISANGEAEIGRQIADAMQKVGNDGVITVEENKGLETETDVVEGMQFDRGYLSPYFVTNADKMTAELEDCL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RHIL3 (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.210e-61
Identity = 117/216 (54.17%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   AR  +L+GV  +  AVKVT+GPKGRNV+I+K+ G P++TKDGV+VA  IE  DK +++GA +V++VA  TN  AGDGTT ATVL  +I  EG K VAAG+N MDLR GI + + AV+ ++K+RA  + +  EI QV TI+ANG+  IGE++ARAM+KVG EGVITV +  T   EL+ V GM+  RGY+SPYFVT+ +  + ELE P
Sbjct:    3 AKEIRFSTDARDRLLRGVELLNNAVKVTLGPKGRNVVIDKAYGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAASIFREGAKLVAAGMNPMDLRRGIDLGVIAVVKEIKARAMKVKSSGEIAQVGTIAANGDATIGEMIARAMDKVGNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEEP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_GLUDA2.468e-6155.0960 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_RHOP52.468e-6153.0260 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_TREPR3.224e-6152.3160 kDa chaperonin OS=Tremblaya princeps GN=groL PE... [more]
CH60_STRMK3.224e-6153.2460 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_STRM53.224e-6153.7060 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH60_STEMA3.224e-6154.6360 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH602_BURCH3.224e-6155.0960 kDa chaperonin 2 OS=Burkholderia cenocepacia (s... [more]
CH60_THICR4.210e-6153.4660 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH60_SILST4.210e-6154.8460 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_RHIL34.210e-6154.1760 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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