FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_LEGMI (60 kDa chaperonin OS=Legionella micdadei GN=groL PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 119/217 (54.84%), Postives = 157/217 (72.35%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AK++ FG  AR  ML GV+ +A+AVK TMGP GRNV++E+S G P VTKDGV+VA  IEF ++ K++GA +VK+VA  T+  AGDGTT ATVL +AI+ EG K+VAAG+N MDL+ GI  A+ AV   L+  ++     + I QV TISAN ++ IG ++A AMEKVGKEGVITV DGN++ NEL  V GM+  RGYISPYF+ + +    ELE+P
Sbjct:    1 MAKELRFGDDARQQMLAGVNALADAVKATMGPSGRNVVLERSFGAPTVTKDGVSVAKEIEFENRFKNMGAQMVKEVAAKTSDTAGDGTTTATVLARAIVVEGHKAVAAGMNPMDLKRGIDKAVAAVTKKLQEMSKPCKDGKAIAQVGTISANSDQAIGSIIAEAMEKVGKEGVITVEDGNSLENELAVVEGMQFDRGYISPYFINNQQNMSAELEHP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_GEOMG (60 kDa chaperonin OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=groL PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 120/216 (55.56%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            +AK I F    R A+L+GV+ +A+AVKVT+GPKGRNVIIEKS G+P +TKDGVTVA  IE  DK +++GA LVK+VA  T+  AGDGTT ATVL QAI  +G K VAAG N M+++ GI  A++ ++++L+  ++ I   +EI QV TISAN ++ IG ++A AMEKVGKEGVITV +   M   LE+V GM+  RGY+SPYFVTDP+  +  LEN
Sbjct:    1 MAKIIKFDQEGRNAILKGVNTLADAVKVTLGPKGRNVIIEKSFGSPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDSAVETIVAELQKISKPIKDHKEIAQVGTISANNDKTIGGIIAEAMEKVGKEGVITVEEAKAMETSLETVEGMQFDRGYLSPYFVTDPERMEASLEN 216          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_COLP3 (60 kDa chaperonin OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=groL PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 117/216 (54.17%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P +TKDGVTVA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL QAI+ EG KS+AAG+N MDL+ GI  A+ A ++ LK  +  ++  + I QV TISAN +  +G+++A AM+KVG EGVITV +G  + +EL+ V GM+  RGY+SPYF+   +    ELENP
Sbjct:    3 AKDVLFGNDARTKMLRGVNVLADAVKVTLGPKGRNVVIDKSFGGPTITKDGVTVAKEIELDDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAIVNEGLKSIAAGMNPMDLKRGIDKAVIAAVAALKDASTPVTDNKAIEQVGTISANSDETVGQIIATAMDKVGAEGVITVEEGQALTDELDVVEGMQFDRGYLSPYFINKQENGTVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_COLMA (60 kDa chaperonin OS=Colwellia maris GN=groL PE=3 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 118/216 (54.63%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P +TKDGVTVA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL QAI+ EG KS+AAG+N MDL+ GI  A+ A +  LK  +  ++  + I QV TISAN +  +G+++A AMEKVG EGVITV +G  + +EL+ V GM+  RGY+SPYF+   +    ELENP
Sbjct:    3 AKDVLFGNDARVKMLRGVNILADAVKVTLGPKGRNVVIDKSFGGPIITKDGVTVAKEIELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAIVNEGLKSIAAGMNPMDLKRGIDKAVIAAVEALKESSTPVTDNKAIEQVGTISANSDETVGKIIATAMEKVGTEGVITVEEGQALTDELDVVEGMQFDRGYLSPYFINKQENGTVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_RHILE (60 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=groL3 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 116/216 (53.70%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F   AR  +L+GV  +  AVKVT+GPKGRNV+I+K+ G P++TKDGV+VA  IE  DK +++GA +V++VA  TN  AGDGTT ATVL  +I  EG K VAAG+N MDLR GI + + AV+ ++K+RA  + +  EI QV TI+ANG+  IGE++A+AM+KVG EGVITV +  T   EL+ V GM+  RGY+SPYFVT+ +  + ELE+P
Sbjct:    3 AKEIRFSNDARDRLLRGVELLNNAVKVTLGPKGRNVVIDKAYGAPRITKDGVSVAKEIELADKFENMGAQMVREVASKTNDLAGDGTTTATVLAASIFREGAKLVAAGMNPMDLRRGIDLGVTAVVKEIKARAMKVKSSSEIAQVGTIAANGDAAIGEMIAKAMDKVGNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 115/215 (53.49%), Postives = 162/215 (75.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK++ FGV AR  ML+GV  +A AV+VT+GPKGRNV+++KS G P++TKDGV VA  IE  DK +++GA +V++VA     AAGDGTT ATVL  AI+ EG KSVAAG+N MDL+ GI +A++AV++DL+  ++ +++ +EI QV  ISANG++EIG+ LA A++KVG EGVITV +  ++  EL+ V GM+  RGYISPYFVT+    + E+++
Sbjct:    3 AKEVKFGVNARDRMLRGVDILANAVQVTLGPKGRNVVLDKSFGAPRITKDGVAVAKEIELDDKFENMGAQMVREVASKAADAAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLQKNSKKVTSNDEIAQVGAISANGDQEIGKFLADAVKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDD 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 115/216 (53.24%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ A + +LK+ +   +  + I QV TISAN +  +G ++A AMEKVG++GVITV +G  + +EL+ V GM+  RGY+SPYF+ + ++   EL+NP
Sbjct:    3 AKDVRFGNDARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.181e-61
Identity = 115/216 (53.24%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ A + +LK+ +   +  + I QV TISAN +  +G ++A AMEKVG++GVITV +G  + +EL+ V GM+  RGY+SPYF+ + ++   EL+NP
Sbjct:    3 AKDVRFGNDARVKMLEGVNILADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCADTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQESGSVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ZYMMO (60 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=3 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.379e-61
Identity = 116/216 (53.70%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ F   AR  +L+GV  +A+AVKVT+GPKGRNV+++K+ G P++TKDGV+VA  IE +DK +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG KSVAAG+N MDL+ GI +A   V+  L+SR++ +S   E+ QV  ISANG+ E+G  +A AMEKVGKEGVITV +      EL+ V GM+  RGY+SPYF+T+P+    EL +P
Sbjct:    3 AKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVLDKAFGAPRITKDGVSVAKEIELKDKFENMGAQMLREVASKTNDLAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGIDLAATKVVESLRSRSKPVSDFNEVAQVGIISANGDEEVGRRIAEAMEKVGKEGVITVEEAKGFDFELDVVEGMQFDRGYLSPYFITNPEKMVAELADP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_VIBFM (60 kDa chaperonin OS=Vibrio fischeri (strain MJ11) GN=groL PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.379e-61
Identity = 116/216 (53.70%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+TEG K+VAAG+N MDL+ GI  A+ A + +LK+ +   +  + I QV TISAN +  +G L+A AM+KVG++GVITV +G  + +EL+ V GM+  RGY+SPYFV + +    +LE+P
Sbjct:    3 AKDVKFGNDARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVVAAVEELKALSVPCADTKAIAQVGTISANSDSTVGNLIAEAMDKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFVNNQEAGSVDLESP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEGMI7.181e-6154.8460 kDa chaperonin OS=Legionella micdadei GN=groL P... [more]
CH60_GEOMG7.181e-6155.5660 kDa chaperonin OS=Geobacter metallireducens (st... [more]
CH60_COLP37.181e-6154.1760 kDa chaperonin OS=Colwellia psychrerythraea (st... [more]
CH60_COLMA7.181e-6154.6360 kDa chaperonin OS=Colwellia maris GN=groL PE=3 ... [more]
CH603_RHILE7.181e-6153.7060 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=... [more]
CH603_BRAJA7.181e-6153.4960 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH602_VIBC37.181e-6153.2460 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH601_VIBCH7.181e-6153.2460 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_ZYMMO9.379e-6153.7060 kDa chaperonin OS=Zymomonas mobilis GN=groL PE=... [more]
CH60_VIBFM9.379e-6153.7060 kDa chaperonin OS=Vibrio fischeri (strain MJ11)... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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