FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 115/216 (53.24%), Postives = 158/216 (73.15%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  +++GV+ +A AVK T+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK VA  T+  AGDGTT ATVL QAI+ EG K VAAG N +DL+ GI  A+ A + +LK  ++ ++T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+ +P+ Q   L++P
Sbjct:    3 AKQVLFADDARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAIVQEGLKYVAAGFNPIDLKRGIDKAVAAAVVELKKASKPVTTSKEIAQVGSISANSDSSIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINNPEKQVAALDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIF5 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 115/216 (53.24%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   +  AGDGTT ATVL QAI+ EG K+V AG+N MDL+ GI  ++  V+ +LK +++   T +E+ QV TISAN +  IG+++A AMEKVG EGVITV +G+ + NEL+ V GM+  RGY+SPYFV +      ELENP
Sbjct:    3 AKQVAFAEHAREKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASQASDEAGDGTTTATVLAQAIIREGLKAVIAGMNPMDLKRGIDKSVIVVVEELKKQSKPCKTQKEVAQVGTISANSDDSIGKIIAEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ACIF2 (60 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 115/216 (53.24%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   +  AGDGTT ATVL QAI+ EG K+V AG+N MDL+ GI  ++  V+ +LK +++   T +E+ QV TISAN +  IG+++A AMEKVG EGVITV +G+ + NEL+ V GM+  RGY+SPYFV +      ELENP
Sbjct:    3 AKQVAFAEHAREKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELADKFENMGAQMVKEVASQASDEAGDGTTTATVLAQAIIREGLKAVIAGMNPMDLKRGIDKSVIVVVEELKKQSKPCKTQKEVAQVGTISANSDDSIGKIIAEAMEKVGNEGVITVEEGSGLANELDVVEGMQFDRGYLSPYFVNNQDKMVAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_VIBCH (60 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 117/216 (54.17%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  ML GV+ +A AVKVT+GPKGR+V++ KS G P +TKDGV+VA  IE  DK +++GA ++KQVA   N  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A +  L   A+  S  + ITQV  ISAN +  IGE++A+AMEKVG+ GVITV +G  + NEL  V GM+  RGY+SPYF+  PK    ELENP
Sbjct:    3 AKHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAKPCSDTQSITQVGAISANSDHAIGEIIAQAMEKVGRNGVITVEEGQALQNELSVVEGMQFDRGYLSPYFINQPKAGCVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELEN 719
            AK+I +   AR+ +L GV+ +A+AVKVT+GPKGRNV+IEKS G+P VTKDGVTVA  IE  ++ +++GA +V++VA  T+  AGDGTT ATVL QAI  EG K VAAG N M+++ GI  A++A++  L+  A+     +EI QV TISANG+  IG+LLA AMEKVGKEGVITV +  +    L+ V GM+  RGY+SPYFVTDP+  K  LE+
Sbjct:    3 AKEIIYNESARSMILAGVNALADAVKVTLGPKGRNVVIEKSFGSPTVTKDGVTVAKEIELENRFENMGAQMVREVASKTSDIAGDGTTTATVLAQAIYREGSKLVAAGHNPMEIKRGIDKAVEAIVEHLRGSAKQTKDAKEIAQVGTISANGDETIGKLLADAMEKVGKEGVITVEEAKSADTTLDVVEGMQFDRGYLSPYFVTDPEAMKANLED 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_VIBC3 (60 kDa chaperonin 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL1 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.940e-60
Identity = 117/216 (54.17%), Postives = 150/216 (69.44%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  ML GV+ +A AVKVT+GPKGR+V++ KS G P +TKDGV+VA  IE  DK +++GA ++KQVA   N  AGDGTT ATVL QA++ EG K+VAAG+N MDL+ GI  A+ A +  L   A+  S  + ITQV  ISAN +  IGE++A+AMEKVG+ GVITV +G  + NEL  V GM+  RGY+SPYF+  PK    ELENP
Sbjct:    3 AKHVLFSTDARQKMLSGVNLLANAVKVTLGPKGRHVVLNKSYGAPTITKDGVSVAKEIELADKFENMGAQMLKQVASKANDEAGDGTTTATVLAQALINEGMKAVAAGMNPMDLKRGIDKAVSAAVEKLHQLAKPCSDTQSITQVGAISANSDHAIGEIIAQAMEKVGRNGVITVEEGQALQNELSVVEGMQFDRGYLSPYFINQPKAGCVELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSYWF (60 kDa chaperonin OS=Psychrobacter sp. (strain PRwf-1) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.037e-59
Identity = 117/217 (53.92%), Postives = 154/217 (70.97%), Query Frame = 3
Query:   72 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            +AKD+ FG+ AR  M+ GV+ +A AVKVT+GPKGRNV+I+KS G P +TKDGV+VA  IE  +K +++GA LV++VA  TN  AGDGTT ATVL QAIL EG KSVAAG+N MDL+ GI  A+ A + ++ + +      + I QV +ISAN + +IGEL+A AM+KVGK+GVITV +G+   + LE V GM+  RGYISPYF     +   E ENP
Sbjct:    1 MAKDVKFGIDARKQMMDGVNVLANAVKVTLGPKGRNVVIDKSFGAPAITKDGVSVAKEIELENKFENMGAQLVREVASKTNDVAGDGTTTATVLAQAILVEGMKSVAAGMNPMDLKRGIDKAVAAAVEEIHNISTPADDSKAIAQVGSISANSDTKIGELIAEAMDKVGKKGVITVEEGSGFEDSLEVVEGMQFDRGYISPYFANKQDSLTAEFENP 217          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.037e-59
Identity = 116/216 (53.70%), Postives = 156/216 (72.22%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  M++GV+ +A AVK T+GPKGRNV+IE+S G P +TKDGV+VA  IE +DK +++GA +VK+VA  T   AGDGTT ATVL Q+I+ EG K V +G N +DL+ GI  A+ A I +L   ++  +T +EI QV +ISAN ++ IG+ +A AMEKVGKEGVITV DG ++ +ELE V GM+  RGY+SPYF+  P+ Q   LE+P
Sbjct:    3 AKDVVFGDSARTKMVEGVNILANAVKTTLGPKGRNVVIERSFGGPIITKDGVSVAKEIELKDKLQNMGAQMVKEVASKTADIAGDGTTTATVLAQSIVREGMKYVVSGYNPLDLKRGIDKAVTAAIEELAKISKPCTTTKEIAQVGSISANSDQSIGQRIAEAMEKVGKEGVITVEDGKSLEDELEVVEGMQFDRGYLSPYFINQPEKQVAVLESP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.037e-59
Identity = 120/217 (55.30%), Postives = 155/217 (71.43%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKDI F   ARA +  GV ++A AVKVT+GP GRNV+I+K  G P  TKDGVTVA  IE  D  +++GA +V++VA  T+  AGDGTT ATVL QAI  EG K+V AG   +DL+ GI  A+  V+++LK+ ++ IS+ +EI QV TISAN + EIGEL+A AMEKVGK+GVITV +   M  EL+ V GM+  RGY+SPYFVT+  T + EL+NPL
Sbjct:    3 AKDIFFDTDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVTAGARPIDLKRGIDRAVKEVVAELKAISRSISSKKEIAQVGTISANNDPEIGELIAEAMEKVGKDGVITVEEAKGMETELKVVEGMQFDRGYLSPYFVTNSDTMEAELDNPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.037e-59
Identity = 114/216 (52.78%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A+ A +   K  +   +  + I QV TISAN +  +G ++A AMEKVG++GVITV +G  + +EL+ V GM+  RGY+SPYF+ + +    +LENP
Sbjct:    3 AKDVKFGNDARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKAVIAAVEQPKRASVECTDTKAIAQVGTISANSDSSVGNIIAEAMEKVGRDGVITVEEGQALQDELDVVEGMQFDRGYLSPYFINNQEAGSVDLENP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BORA17.940e-6053.2460 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH60_ACIF57.940e-6053.2460 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH60_ACIF27.940e-6053.2460 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH602_VIBCH7.940e-6054.1760 kDa chaperonin 2 OS=Vibrio cholerae GN=groL2 PE... [more]
CH602_SORC57.940e-6054.8860 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH601_VIBC37.940e-6054.1760 kDa chaperonin 1 OS=Vibrio cholerae serotype O1... [more]
CH60_PSYWF1.037e-5953.9260 kDa chaperonin OS=Psychrobacter sp. (strain PRw... [more]
CH60_POLNS1.037e-5953.7060 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH60_CHLCH1.037e-5955.3060 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH601_VIBHA1.037e-5952.7860 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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