FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PELPD (60 kDa chaperonin OS=Pelobacter propionicus (strain DSM 2379) GN=groL PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 118/217 (54.38%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK I F    R A+L+GV+ +A+ VKVT+GPKGRNV+I+KS G P +TKDGVTVA  IE  DK +++GA LVK+VA  T+  AGDGTT ATVL QAI  +G K VAAG N M+++ GI  A++ ++++L+  ++ I   +EI QV TISAN ++ IG+++A AMEKVGKEGVITV +  +M   LE+V GM+  RGY+SPYFVTDP+  +  LEN L
Sbjct:    3 AKIIKFDQEGRNAILKGVNILADTVKVTLGPKGRNVVIDKSFGAPLITKDGVTVAKEIELEDKFENMGAQLVKEVASKTSDVAGDGTTTATVLAQAIYRQGSKLVAAGHNPMEIKRGIDKAVETIVAELQKISKPIVDHKEIAQVGTISANNDKTIGDIIAEAMEKVGKEGVITVEEAKSMDTTLETVEGMQFDRGYLSPYFVTDPERMEAALENAL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 114/216 (52.78%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  +++GV+ +A AVK T+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK VA  T+  AGDGTT ATVL QA++ EG K VAAG N +DL+ GI  A+ A + +LK  ++ ++T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+  P+ Q   L++P
Sbjct:    3 AKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 114/216 (52.78%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  +++GV+ +A AVK T+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK VA  T+  AGDGTT ATVL QA++ EG K VAAG N +DL+ GI  A+ A + +LK  ++ ++T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+  P+ Q   L++P
Sbjct:    3 AKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BORBR (60 kDa chaperonin OS=Bordetella bronchiseptica GN=groL PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 114/216 (52.78%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK + F   AR  +++GV+ +A AVK T+GPKGRNV++E+S G P VTKDGV+VA  IE +DK +++GA LVK VA  T+  AGDGTT ATVL QA++ EG K VAAG N +DL+ GI  A+ A + +LK  ++ ++T +EI QV +ISAN +  IG+++A AM+KVGKEGVITV DG ++ NEL+ V GM+  RGY+SPYF+  P+ Q   L++P
Sbjct:    3 AKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH604_SINMW (60 kDa chaperonin 4 OS=Sinorhizobium medicae (strain WSM419) GN=groL4 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 114/216 (52.78%), Postives = 157/216 (72.69%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK+I F    R  +L+GV  +  AVKVT+GPKGRNV+I++S G P++TKDGV+VA  IE  DK +++GA +V++VA  TN  AGDGTT ATVL  +I  EG K VAAG+N MDL+ GI +A+ AV++++K RA  +++  EI QV TI+ANG+  +GE++A AMEKVG EGVITV +  T   EL+ V GM+  RGY+SPYFVT+ +  + EL++P
Sbjct:    3 AKEIIFSTEVRDRLLRGVELLNNAVKVTLGPKGRNVVIDRSYGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAASIFREGAKLVAAGMNPMDLKRGIDLAVTAVLAEIKLRATKVNSSSEIAQVGTIAANGDASVGEMIAGAMEKVGNEGVITVEEARTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH602_BRASB (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.354e-59
Identity = 113/216 (52.31%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ F   AR  +++GV  +A AVKVT+GPKGRNV+IEKS G P++TKDGVTVA  IE  DK +++GA L++QVA  TN  AGDGTT ATVL QAI+ EG K+VAA LN +DL+ GI +A+   I D++ RA+ + + EE+ QV TISAN +  +G+++A A++KVG +GVITV +  ++  EL+ V G++  RGY+SPYFVT+      E E P
Sbjct:    3 AKDVKFAADARERLIRGVDILANAVKVTLGPKGRNVLIEKSFGAPRITKDGVTVAKEIELEDKYENLGAQLLRQVASKTNDLAGDGTTTATVLAQAIVREGAKAVAASLNPLDLKRGIDLAVAEAIKDIEKRARKVQSSEEVAQVGTISANSDAAVGKIIATAVKKVGNDGVITVEEAKSLETELDVVEGLQFDRGYLSPYFVTNSDKLLVEFEEP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.769e-59
Identity = 119/217 (54.84%), Postives = 157/217 (72.35%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AKDI F   ARA +  GV ++A AVKVT+GP GRNV+I+K  G P  TKDGVTVA  IE  D  +++GA +V++VA  T+  AGDGTT ATVL QAI  EG K+VAAG   +DL+ GI  A+  V+++L++ ++ IS  +EI QV TISAN + EIGEL+A AM+KVGK+GVITV +   M  EL+ V GM+  RGY+SPYFVT+P+T + E+E+PL
Sbjct:    3 AKDIIFDSDARAKLKVGVDKLANAVKVTLGPAGRNVLIDKKFGAPTSTKDGVTVAKEIELADAVENMGAQMVREVASKTSDVAGDGTTTATVLAQAIYREGLKNVAAGARPIDLKRGIDRAVKEVVAELRNISRSISGKKEIAQVGTISANNDPEIGELIAEAMDKVGKDGVITVEEAKGMDTELKVVEGMQFDRGYLSPYFVTNPETMEAEIEDPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH603_RHIME (60 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.769e-59
Identity = 115/216 (53.24%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK I F   AR  +L+GV  +  AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  DK +++GA +V+ VA  TN  AGDGTT ATVL  +I  EG K V+ G+N MDL+ GI + + AV++++K+RA  + +  EI QV TI+ANG+  +GE++ARAMEKVG EGVITV +  T   EL+ V GM+  RGY+SPYFVT+ +  + ELE+P
Sbjct:    3 AKQIVFSTDARDRLLRGVELLNNAVKVTLGPKGRNVVIDKSYGAPRITKDGVSVAKEIELEDKFENMGAQMVRAVASKTNDLAGDGTTTATVLAASIFREGAKLVSVGMNPMDLKRGIDLGVAAVLAEIKARATKVISSSEIAQVGTIAANGDAGVGEMIARAMEKVGNEGVITVEEARTADTELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RICBR (60 kDa chaperonin OS=Rickettsia bellii (strain RML369-C) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.310e-59
Identity = 117/215 (54.42%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   78 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            K I  G  AR  ML+G+  +A+AVKVT+GPKGRNV+IE+S G PK+TKDGVTVA SIE +DK ++ GA L+K  A    + AGDGTT ATVL +A+  EG K VAAG N MDL+ G+ +A++ V+ ++K  ++ I + EEI QV TIS+NG++EIGE +A+AME+VGKEGVITV +      ++E V GM   RGY+SPYFVT+ +    ELENP
Sbjct:    4 KLIKHGSKAREQMLEGIDILADAVKVTLGPKGRNVLIEQSFGAPKITKDGVTVAKSIELKDKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALAREGNKLVAAGYNPMDLKRGMDLAVNTVLEEVKKASKKIDSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_RICB8 (60 kDa chaperonin OS=Rickettsia bellii (strain OSU 85-389) GN=groL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.310e-59
Identity = 117/215 (54.42%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   78 KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            K I  G  AR  ML+G+  +A+AVKVT+GPKGRNV+IE+S G PK+TKDGVTVA SIE +DK ++ GA L+K  A    + AGDGTT ATVL +A+  EG K VAAG N MDL+ G+ +A++ V+ ++K  ++ I + EEI QV TIS+NG++EIGE +A+AME+VGKEGVITV +      ++E V GM   RGY+SPYFVT+ +    ELENP
Sbjct:    4 KLIKHGSKAREQMLEGIDILADAVKVTLGPKGRNVLIEQSFGAPKITKDGVTVAKSIELKDKIRNAGAQLLKSAATKAAEVAGDGTTTATVLARALAREGNKLVAAGYNPMDLKRGMDLAVNTVLEEVKKASKKIDSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKNFSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PELPD1.354e-5954.3860 kDa chaperonin OS=Pelobacter propionicus (strai... [more]
CH60_BORPE1.354e-5952.7860 kDa chaperonin OS=Bordetella pertussis GN=groL ... [more]
CH60_BORPA1.354e-5952.7860 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH60_BORBR1.354e-5952.7860 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]
CH604_SINMW1.354e-5952.7860 kDa chaperonin 4 OS=Sinorhizobium medicae (stra... [more]
CH602_BRASB1.354e-5952.3160 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH60_CHLL21.769e-5954.8460 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH603_RHIME1.769e-5953.2460 kDa chaperonin 3 OS=Rhizobium meliloti GN=groL3... [more]
CH60_RICBR2.310e-5954.4260 kDa chaperonin OS=Rickettsia bellii (strain RML... [more]
CH60_RICB82.310e-5954.4260 kDa chaperonin OS=Rickettsia bellii (strain OSU... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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