FC876216

Overview
NameFC876216
Unique NameFC876216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12983 contig Ccv1_Contig12983:22..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_ASHGO (COP9 signalosome complex subunit 5 OS=Ashbya gossypii GN=RRI1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.623e-42
Identity = 83/157 (52.87%), Postives = 110/157 (70.06%), Query Frame = 1
Query:  235 AQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPE 705
            +Q + QQE  W  DP YF++  +SALA +K++ HA  GG +EV+G++ G    + I+V+D++ LPVEGTETRVNAQ ++YEY V Y +T    G     VGWYHSHPGYGCWLSGID     LNQ FQ+P+LA+V+DP R+ ++G    GAFRT PE
Sbjct:   54 SQVRVQQEL-WKQDPTYFQKAALSALACMKILRHAFDGGDMEVLGMLLGYVQDEMIVVVDSYRLPVEGTETRVNAQMESYEYTVQYLETAVPEGLA--IVGWYHSHPGYGCWLSGIDAETQTLNQNFQDPYLAIVVDPKRSKASGVIDIGAFRTMPE 207          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_KLULA (COP9 signalosome complex subunit 5 OS=Kluyveromyces lactis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.857e-38
Identity = 81/191 (42.41%), Postives = 117/191 (61.26%), Query Frame = 1
Query:  136 WELENNIVSMETPPTNSTADTSASDAIFFYDEGAQTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPER 708
            W   N  ++ ET   +S++D+S +  +    +    +         +P +F++  IS LA  KM+ HA  GG IEVMG++ G T  D I+V D ++LPV+GTETRVNA  ++YEYMV Y   +    + +  VGWYHSHPGYGCWLS ID+    LNQ +Q+P+LA+V+DP +++S      GAFRT P +
Sbjct:   17 WIQANEDINTETS-LSSSSDSSTTIPVI---DHLPARIPYATDLKRNPCHFQKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIVVKDCYSLPVQGTETRVNAHMESYEYMVQY--LDAFVTKEDKIVGWYHSHPGYGCWLSNIDIQTQSLNQNYQDPYLAIVVDPKKSLSGNTLDIGAFRTLPSK 201          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_CANGA (COP9 signalosome complex subunit 5 OS=Candida glabrata GN=RRI1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 71/151 (47.02%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  271 NDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY--SQTNKQAGRLE---NAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPER 708
            N P +++ V +S LA  K++ HA  GG IEVMG++ G   G+  ++ D F LPVEGTET VNA  ++YEYMV +      +   R E   N +GWYHSHPGY CWLS ID+    LNQQ Q+P+LA+V+DP ++ +  K   G+FRTY ++
Sbjct:   66 NSPLFYQNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGNTFVIFDCFELPVEGTETMVNAHMESYEYMVQFYHEMVERSYTRNEENLNIIGWYHSHPGYDCWLSNIDMQTQSLNQQHQDPYLAIVVDPHKSKNDQKVRIGSFRTYQDQ 216          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_YEAST (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae GN=RRI1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  238 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRT 696
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+    LNQ+FQ+P++A+V+DP +++       GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS7 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  238 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRT 696
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+    LNQ+FQ+P++A+V+DP +++       GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: CSN5_YEAS1 (COP9 signalosome complex subunit 5 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RRI1 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 1
Query:  238 QTKFQQEKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDY----------SQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRT 696
            +TK +Q+     D   +  V IS L+  K+  +A  GG IE+MG++ G T  D I+VMD F LPV GTETRVNAQ ++YEYMV Y                 G   N VGW+HSHPGY CWLS ID+    LNQ+FQ+P++A+V+DP +++       GAFRT
Sbjct:   54 KTKLKQQSS--TDIPSYTHVLISKLSCEKITHYAVRGGNIEIMGILMGFTLKDNIVVMDCFNLPVVGTETRVNAQLESYEYMVQYIDEMYNHNDGGDGRDYKGAKLNVVGWFHSHPGYDCWLSNIDIQTQDLNQRFQDPYVAIVVDPLKSLEDKILRMGAFRT 214          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 70/153 (45.75%), Postives = 92/153 (60.13%), Query Frame = 1
Query:  277 PHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKT-DGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTYPERIQPPDEP 729
            P   + + IS+LALLKM+ HAR+G  +EVMGLM G+  D   I V+D FA+P  GT   V A    ++  M+D     KQ GR E  +GWYHSHPG+GCWLS +DV+     +Q Q   +AVV+DP ++V  GK    AFRT   +  P  EP
Sbjct:   25 PDTAETIHISSLALLKMLQHARAGVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDML---KQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSV-RGKVVIDAFRTI--KTSPTAEP 171          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 1
Query:  289 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTY-PERIQPPDEP 729
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V+ +A  + +  +     KQ GR E  VGWYHSHPG+GCWLSG+D++     +   +  +AVV+DP ++V  GK    AFR+  P+ I    EP
Sbjct:   28 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRSINPQTIMLGQEP 173          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 65/144 (45.14%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  268 VNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRT 696
            ++ P   + V IS+LALLKM+ HARSG  +EVMGLM G   D   I V D FA+P  GT   V +    Y+    +    K  GR EN VGWYHSHPG+GCWLS +DV+     +      +AVV+DP ++V  GK    AFR+
Sbjct:   20 LDHPDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVK-GKVMLDAFRS 160          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTY-PERIQPPDEP 729
            V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++     +   +  +AVV+DP ++V  GK    AFRT  P+ +    EP
Sbjct:   33 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVK-GKVVIDAFRTINPQSMALNQEP 176          
The following BLAST results are available for this feature:
BLAST of FC876216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_ASHGO1.623e-4252.87COP9 signalosome complex subunit 5 OS=Ashbya gossy... [more]
CSN5_KLULA1.857e-3842.41COP9 signalosome complex subunit 5 OS=Kluyveromyce... [more]
CSN5_CANGA2.509e-3547.02COP9 signalosome complex subunit 5 OS=Candida glab... [more]
CSN5_YEAST4.430e-3245.40COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS74.430e-3245.40COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
CSN5_YEAS14.430e-3245.40COP9 signalosome complex subunit 5 OS=Saccharomyce... [more]
PSDE_DICDI5.245e-2545.7526S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_ARATH1.993e-2443.6226S proteasome non-ATPase regulatory subunit 14 OS... [more]
YPT5_CAEEL3.400e-2445.14Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
PSDE_CAEEL4.440e-2445.2726S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32001G12EF DevOvary1 Citrus clementina cDNA clone C32001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876216 ID=FC876216; Name=FC876216; organism=Citrus clementina; type=EST; length=754bp
GATATATAGAAATTAGAATTGCTGTTGGTGTTGTTGGTGTTCGTCTTGTT
TGTTGTTCCAGACAGTGTAGGGTGTAGGCAGAGAGGGAGAGAAAACAACA
TAGTATCGATGGACTCGTCAATAGCGCAAAAGACATGGGAACTGGAAAAC
AACATAGTATCGATGGAGACACCGCCGACAAACTCAACAGCCGACACGTC
AGCATCGGACGCGATTTTCTTCTACGACGAAGGGGCGCAGACCAAGTTCC
AGCAAGAGAAGCCCTGGGTCAATGACCCTCACTACTTCAAGCGCGTGAAG
ATCTCCGCACTCGCCCTCCTCAAGATGGTCGTCCATGCGCGATCCGGTGG
GACCATCGAGGTCATGGGCCTTATGCAAGGCAAAACCGACGGCGACGCCA
TCATTGTCATGGACGCCTTTGCTTTGCCCGTTGAAGGTACCGAAACCAGG
GTTAATGCTCAGGCCGATGCTTATGAATATATGGTCGATTATTCCCAAAC
CAACAAACAGGCCGGACGTCTGGAGAATGCTGTTGGGTGGTACCATTCAC
ATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGTTTCAATCTCAATG
CTTAATCAGCAGTTTCAGGAGCCATTTTTGGCTGTTGTGATTGATCCTAC
TAGGACTGTTTCTGCTGGGAAAAGTTGAGATGGAGCTTTCAGGACGTATC
CTGAAAGGATACAGCCTCCGGATGAACCCATCTCTGAGTATCAGACCATT
CCTT
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