FC876216

Overview
NameFC876216
Unique NameFC876216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12983 contig Ccv1_Contig12983:22..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  289 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++     +   E  +AVV+DP ++V  GK    AFR
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.573e-24
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  289 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++     +   E  +AVV+DP ++V  GK    AFR
Sbjct:   29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 161          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.891e-24
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  289 KRVKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            ++V IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLSG+D++     +   E  +AVV+DP ++V  GK    AFR
Sbjct:   27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDML---KQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVK-GKVVIDAFR 159          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.759e-23
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+     +Q     +AVV+DP ++V  GK    AFR
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFR 157          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            V IS++ALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV+     +Q     +AVV+DP ++V  GK    AFR
Sbjct:   27 VYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVK-GKVVIDAFR 157          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.909e-23
Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            V IS+LALLKM+ H+R+G  +EVMGLM G   D   + V+D FA+P  GT   V A  D ++  M+D     KQ GR +  VGWYHSHPG+GCWLS +DV      +Q     +AVV+DP ++V  GK    AFR
Sbjct:   32 VYISSLALLKMLKHSRAGVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDML---KQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVK-GKVVIDAFR 162          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEY-MVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFRTY-PERIQPPDEP 729
            V IS+LALLKM+ H R G  +EVMGLM G+  D   + V+D FA+P  GT   V A    ++  M+D     KQ GR E  VGWYHSHPG+GCWLS +D++     +Q     +AVV+DP ++V  GK    AFR   P  +    EP
Sbjct:   30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDML---KQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVK-GKVVIDAFRLINPSTLMMGQEP 173          
BLAST of FC876216 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  295 VKISALALLKMVVHARSGGTIEVMGLMQGK-TDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENAVGWYHSHPGYGCWLSGIDVSISMLNQQFQEPFLAVVIDPTRTVSAGKS*DGAFR 693
            V+IS+LALLKM+ H R+G  +EVMGLM G+  D   + V+D FA+P  GT   V +    ++  ++     K  GR E  VGWYHSHPG+GCWLS +D+S     ++  +  +AVV+DP ++V  GK    AFR
Sbjct:   21 VQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQ--MEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVK-GKVVIDAFR 151          
The following BLAST results are available for this feature:
BLAST of FC876216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_MOUSE7.573e-2446.7226S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN7.573e-2446.7226S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME9.891e-2446.7226S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_YEAST3.759e-2346.6726S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
RPN11_CANGA4.909e-2346.6726S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_ASHGO4.909e-2347.4126S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_SCHPO8.373e-2344.5926S proteasome regulatory subunit rpn11 OS=Schizos... [more]
RPN11_ENCCU2.436e-2244.0326S proteasome regulatory subunit RPN11 OS=Encepha... [more]

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Properties
Property NameValue
Genbank descriptionC32001G12EF DevOvary1 Citrus clementina cDNA clone C32001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876216 ID=FC876216; Name=FC876216; organism=Citrus clementina; type=EST; length=754bp
GATATATAGAAATTAGAATTGCTGTTGGTGTTGTTGGTGTTCGTCTTGTT
TGTTGTTCCAGACAGTGTAGGGTGTAGGCAGAGAGGGAGAGAAAACAACA
TAGTATCGATGGACTCGTCAATAGCGCAAAAGACATGGGAACTGGAAAAC
AACATAGTATCGATGGAGACACCGCCGACAAACTCAACAGCCGACACGTC
AGCATCGGACGCGATTTTCTTCTACGACGAAGGGGCGCAGACCAAGTTCC
AGCAAGAGAAGCCCTGGGTCAATGACCCTCACTACTTCAAGCGCGTGAAG
ATCTCCGCACTCGCCCTCCTCAAGATGGTCGTCCATGCGCGATCCGGTGG
GACCATCGAGGTCATGGGCCTTATGCAAGGCAAAACCGACGGCGACGCCA
TCATTGTCATGGACGCCTTTGCTTTGCCCGTTGAAGGTACCGAAACCAGG
GTTAATGCTCAGGCCGATGCTTATGAATATATGGTCGATTATTCCCAAAC
CAACAAACAGGCCGGACGTCTGGAGAATGCTGTTGGGTGGTACCATTCAC
ATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGTTTCAATCTCAATG
CTTAATCAGCAGTTTCAGGAGCCATTTTTGGCTGTTGTGATTGATCCTAC
TAGGACTGTTTCTGCTGGGAAAAGTTGAGATGGAGCTTTCAGGACGTATC
CTGAAAGGATACAGCCTCCGGATGAACCCATCTCTGAGTATCAGACCATT
CCTT
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