FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 6.372e-31
Identity = 72/142 (50.70%), Postives = 88/142 (61.97%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 509
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+ K+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEY+VESTGVFT               VIISAPS DAPMFV GVN   YKP++
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ANVVAVNDPFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDM 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.087e-30
Identity = 74/147 (50.34%), Postives = 94/147 (63.95%), Query Frame = 3
Query:   72 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 509
            M + K+GINGFGRIGRLV R    ++ V++V+VNDPFI  +YM YM K DS HG +   E+  ++ K  + G K ++V   R+P  IPW + GAEYVVESTGVF T               VIISAPS DAPMFVVGVNE+ Y+  +
Sbjct:    1 MSRAKVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFP-GEVSTENGKLKVNG-KLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSADAPMFVVGVNENSYEKSM 145          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.420e-30
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 506
            V + +NGFGRIGRLV R+ + R D+ LVA+NDPFI+TDY  YM KYDS HG++   E+    D  +L G+K V VF  ++P  +PW + G +  ++STG+F                V+I+APS  APM+V+GVNE  Y P+
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRF-DGEVSHDKDHIILNGKK-VAVFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPSGSAPMYVMGVNEETYTPD 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.420e-30
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 506
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+ DY  YM KYDS HG++        D+ +L+   K V VF  R+P  +PW E   +  ++STGVF                V+I+APS  APMFVVGVNE +Y  E
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGE--VSHDENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYNGE 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.420e-30
Identity = 66/142 (46.48%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 506
            ++I INGFGRIGRLV R+ LQR D+E+VAVNDPFI+ DY  YM KYDS HG++K       DDK ++     +  +  R+P  +PW     +  V+STGVF                V+I+APS  APMFVVGVN  +Y P+
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHGRYK--GTVSHDDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSSAPMFVVGVNHTKYTPD 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.854e-30
Identity = 72/142 (50.70%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 509
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+ K+DS HG++K       +   L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               VIISAPS DAPMFV GVN   Y P++
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKG--TVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDM 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.421e-30
Identity = 72/142 (50.70%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 509
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+ K+DS HG++K   +  +    ++ G+K +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   Y P++
Sbjct:    3 KIGINGFGRIGRLVLRAAVDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFKG-TVSAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPDM 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.162e-30
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 506
            VK+ ING G+IGRLV R+ L R +VE+VA+NDPFIT DY  YM KYDS HG  K+      +  TL+   K + VF  R+P ++PW E G +  ++STGVF                V+I+APS  APMFV+GVNE +Y  E
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRANVEVVAINDPFITVDYAAYMFKYDSTHG--KYAGDVQYEGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYAGE 141          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.162e-30
Identity = 68/156 (43.59%), Postives = 99/156 (63.46%), Query Frame = 3
Query:   36 HSFTAQFHLSRIMGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 503
            H  T    +  +  ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YM KYDS HG++K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                V+ISAPS DAPMFV+GVNE++Y P
Sbjct:   61 HPATPPPKMVSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 3.162e-30
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 509
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YM KYDS HG++        DDK ++   K +  +  R+P  +PW  +  +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGE--VSHDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P2_DROME6.372e-3150.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_SCHMA1.087e-3050.34Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_ZYGRO1.420e-3045.07Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P2_KLULA1.420e-3047.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_YEAST1.420e-3046.48Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_DROME1.854e-3050.70Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_DROHY2.421e-3050.70Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_ASHGO3.162e-3047.18Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PT_HUMAN3.162e-3043.59Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_YEAST3.162e-3044.76Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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