FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 500
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 140          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 500
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 140          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.853e-24
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 497
            +KIGINGFGRIGR+V R    RDD+E+V +ND  I  +YM YM KYDS HG++    ++VKD   ++ G K + V   R+P  + W   G +  VE+TG+F                V+++ PSKDA PMFV GVN + Y
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRF-DGTVEVKDGNLVVNG-KTIRVTAERDPANLNWGAIGVDIAVEATGLFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGVNFNAY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.853e-24
Identity = 60/153 (39.22%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 503
            +K+GINGFGRIGR+V + +    L   ++++VAV D     +Y  Y  +YD+VHG++K+     K       DD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP S  A   V+GVN HEY P
Sbjct:    3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNP 155          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 57/143 (39.86%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 506
            +KIGINGFGRIGR++ R+  +R+++E+VA+ND  +   Y+ YM KYDS HG +K  +++VK++  ++ G+K + +  +++PE++ W +   + V+ESTG+F                V+I+ PSK D PMFV G N  +YK E
Sbjct:    3 IKIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFK-KDIEVKNNNLIINGKK-IRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSKDDIPMFVRGANFDKYKGE 142          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 58/143 (40.56%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYKPE 506
            +K+GINGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ KDD  ++ G K + VF  ++P +IPW + G + V+E+TGVF                VII+AP+K+  + VV GVNE +Y P+
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEAKDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPK 142          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P1_SHIFL7.544e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY7.544e-2441.13Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI7.544e-2441.13Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI7.544e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL67.544e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO577.544e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_HAEIN9.853e-2443.57Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3PG_TRYCR9.853e-2439.22Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_BUCAP1.287e-2339.86Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_AQUAE2.867e-2340.56Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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