FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLU (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLI (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12) GN=epd PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOLC (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL6 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6 GN=epd PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOL5 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOK1 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOHS (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECODH (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECOBW (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: E4PD_ECO8A (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=epd PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQ---RDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVV-GVNEHEYKPE 506
            V++ INGFGRIGR V R + +   R ++ +VA+N+       M ++ KYD+ HG++     + +D   L  G+  + V   R+ + +PW E G + V++ TGV+                V+ S P S D    VV GVN+ + + E
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFAWEVRQERDQ--LFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAE 146          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
E4PD_ECOLU8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLI8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOLC8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL68.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOL58.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOK18.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOHS8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECODH8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOBW8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO8A8.652e-1231.29D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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