FC876226
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 4.178e-36 Identity = 72/123 (58.54%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGT-MGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 W ATFYG G GGACGY N Y TAALST LF +G CG C+EL+C P WCNPG+P+++IT TN CPPN+ P+D+GGWCNPPR HFD+A P FLKLAQ AGIVPV Sbjct: 52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPV 173
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.146e-32 Identity = 67/127 (52.76%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 148 AGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 A W ATFYGG+D SGTMGGACGYGNLY Q YG+N AALST LFN+G SCG C+ + C G P WC G AI +T TN+ GGWCN RP+FD++ P + + Y AGIVP+ Sbjct: 19 ARSDWLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGK-AITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPI 133
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 6.243e-32 Identity = 63/128 (49.22%), Postives = 87/128 (67.97%), Query Frame = 1 Query: 139 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 G A W+SA A++Y +D +GGACG+G+L GYG+ T LSTALF G +CG C+E+KC D ++C PG +I++TATNFC PNF P+D GG CNPP HF L + F K+A ++AG++P+ Sbjct: 26 GSSALSEWRSAKASYYA-ADPEDAIGGACGFGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPI 151
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31 Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 W+ A AT+Y ++ +GGACGYG+L GYG+ T LS LF G CGACFEL+C D +WC PG +I++TATNFC PN+ D GG CNPP HF L + F K+A ++AG +PV Sbjct: 40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGT-SIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPV 159
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.047e-31 Identity = 63/124 (50.81%), Postives = 84/124 (67.74%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-RAGIVPV 522 W AHAT+YG +D+ ++GGACGY N Y G+G +TAALS LF +G SCG C++++C DP+WC G A+ +TATNFCP N +N GWCN PR HFD++ P F ++A+ GIVPV Sbjct: 27 WIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRG-AAVTVTATNFCPTN-----NNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPV 144
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 131.339 bits (329), Expect = 2.623e-30 Identity = 65/122 (53.28%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGT-MGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 W A A +YG GT + GACGYG+L GYG+ TAALSTALFN+G SCGAC+E+ C +PQ C G +I ITAT+ CPP A WC P HFDL++PMF+K+AQ +A +VPV Sbjct: 45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSG--SIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPV 157
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28 Identity = 61/149 (40.94%), Postives = 85/149 (57.05%), Query Frame = 1 Query: 82 LCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 LC F + LF A W+ A AT D S ++ GGACGYG+L + +A LS LFN G SCGAC E++C +WC G+P++++TAT+FCPPN SD GGWCN P+ H +L+ F +A+ RA ++P+ Sbjct: 10 LCLFFILCRLFQAT--------AEDDWKIATATLSRDRDGSSSVATGGACGYGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPI 150
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.732e-26 Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1 Query: 214 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 GGACGYG+L YG TA +S ALF G +CG C+E++C WC G+P +++TAT+FC PN D GGWCN P+ HF+++ FL++A+ +A IVPV Sbjct: 52 GGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPV 154
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.809e-24 Identity = 68/137 (49.64%), Postives = 81/137 (59.12%), Query Frame = 1 Query: 127 AKIPGVFAG----GPWQSAHATFYGGSDASGTM-GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPV 522 AK+P V G GPW HATFYGG DASGT GGACGY + + GYG TAA+S ALF+NG CGAC+ELK GD +++TATN PP NG HFDL MP FL +A+ + G+VPV Sbjct: 67 AKMPHVNHGRYKCGPWVDGHATFYGGRDASGTTEGGACGYKD--ADGYGAMTAAVSPALFDNGAGCGACYELK--GD------SGKTVVVTATNQAPPPV-----NG----MKGEHFDLTMPAFLSIAEEKLGVVPV 184
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13 Identity = 50/145 (34.48%), Postives = 68/145 (46.90%), Query Frame = 1 Query: 70 LFRMLCFFSV--ALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495 L R + F S+ A +F + A W A AT+YG +D G+ GGACGYG L A+S LF G CGAC++++C D C+ A+ + T+ CP GG C R HFDL+ F +LA Sbjct: 13 LIRSVLFVSLLSAAFVFDSGEAGAAHRVVDPEWHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRC-LDASICS--RRAVTVIVTDECP---------GGVCAFGRTHFDLSGAAFARLA 145 The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bpback to top |