FC876226
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12 Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 79 MLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ 498 ++ F ++A + ++ A + W AT+YG ++ SGT GGACGY G++ + AA S +++ +G CG+C+++KC G+P C+ G P + + T+ CP GG C HFDL+ F +A+ Sbjct: 11 IVAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CS-GKP-VTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAK 139
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12 Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAG 510 W+ A AT+YG ++ G+ GGACGYG+L ++S LF +G CGAC+++KC D C+ A+ + T+ CP GG C R HFDL+ F ++A AG Sbjct: 48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKC-LDHGICS--RRAVTVIVTDECP---------GGLCAFGRTHFDLSGAAFSRMAVAGAG 153
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12 Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGTMGGACGY-GNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495 W + AT+YG ++ +G+ GGACGY G ++ + AA S +++ +GL CG+C+++KC G+ C+ GNP + + T+ CP GG C HFDL+ F +A Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMA 137
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 5.495e-12 Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 1 Query: 151 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQ-GYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAG 510 G W S AT+YGG G+ GGACGY + Q + AA +LF NG CG+C+++KC G+ + C+ G P + + T+ CP GG C HFD++ F +A G Sbjct: 42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACS-GRP-VTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMG 150
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11 Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 160 WQSAHATFYGGSDASGTMGGACGYGNLYSQG-YGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495 W + AT+YG ++ +G+ GGACGY Q + AA S +++ +GL CG+C+++KC G+ C+ GNP + + T+ CP GG C HFDL+ F +A Sbjct: 37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CS-GNP-VTVVLTDECP---------GGPCLSEPVHFDLSGTAFGAMA 137
BLAST of FC876226 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 7.935e-11 Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 1 Query: 97 VALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYS-QGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 495 + S AT N + + W A AT+YG + G+ GGACGYG L + A++ LF NG CGAC++++C D C+ A+ + T+ CP C+ HFDL+ +F +LA Sbjct: 19 IGSSALATTNRHV----SNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRC-LDKSICS--RRAVTVIITDECP-----------GCSKTSTHFDLSGAVFGRLA 134 The following BLAST results are available for this feature:
BLAST of FC876226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876226 ID=FC876226; Name=FC876226; organism=Citrus clementina; type=EST; length=522bpback to top |