FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.268e-56
Identity = 106/160 (66.25%), Postives = 134/160 (83.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIGTQTLDIV ++ D+F+VV LA  +N  LLA Q+K+F+P++VA+  ES L+ IK+A+A+++  P +L GE GV+E AR+ D+ +VVTGIVGCAGL PT+AAIEAGKDIALANKETLIAGGP VLPL  KH +K+LPADSEHSAIFQC+Q
Sbjct:    2 KKITILGSTGSIGTQTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEIVAICQESQLNTIKDAIASLDYSPILLTGEAGVVEVARYGDSESVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAGGPVVLPLVEKHGVKLLPADSEHSAIFQCLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.891e-54
Identity = 102/160 (63.75%), Postives = 131/160 (81.88%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P IL GE GV E AR+ DA  VVTGIVGCAGL PT+AAIEAGKDIALANKETLIA GP VLPL  KH + I PADSEHSAIFQCIQ
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTGEAGVTEVARYGDAEIVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAAGPVVLPLLQKHGVTITPADSEHSAIFQCIQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNE7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus elongatus (strain PCC 7942) GN=dxr PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.891e-54
Identity = 102/160 (63.75%), Postives = 131/160 (81.88%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P IL GE GV E AR+ DA  VVTGIVGCAGL PT+AAIEAGKDIALANKETLIA GP VLPL  KH + I PADSEHSAIFQCIQ
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTGEAGVTEVARYGDAEIVVTGIVGCAGLLPTIAAIEAGKDIALANKETLIAAGPVVLPLLQKHGVTITPADSEHSAIFQCIQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CYAP4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxr PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.891e-54
Identity = 102/160 (63.75%), Postives = 134/160 (83.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIGTQTLDIVA++ D+FR+V LAAG ++  L  Q+++F+PQ+VA+ +E  LD++K A+A+++ +P ++AG  GV E A + DA TVVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VLPL  ++ +K+LPADSEHSAIFQC+Q
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGLAAGRSLDKLIPQIRQFRPQIVALADEQQLDDLKAAIADLDPQPILVAGPAGVCEVAAYGDAKTVVTGIVGCAGLLPTIAAIKAGKDIALANKETLIAGGPVVLPLVEQYGVKLLPADSEHSAIFQCLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNY3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=dxr PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.098e-53
Identity = 105/161 (65.22%), Postives = 128/161 (79.50%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K IS+LGSTGSIGTQTLDIV  H D F+VV LAAG N+ LLA QV  F+P++VA+R    L+++K A+A + + +P  + GE+GV+E AR+ DA +VVTGIVGCAGL PT+AAI AGKDIALANKETLIAG P VLPL  K  +K+LPADSEHSAIFQC+Q
Sbjct:    3 KRISILGSTGSIGTQTLDIVTHHPDAFQVVGLAAGGNVALLAQQVAEFRPEIVAIRQAEKLEDLKAAVAELTDYQPMYVVGEEGVVEVARYGDAESVVTGIVGCAGLLPTMAAIAAGKDIALANKETLIAGAPVVLPLVEKMGVKLLPADSEHSAIFQCLQ 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEEB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.174e-53
Identity = 99/160 (61.88%), Postives = 132/160 (82.50%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K +++LGSTGSIGTQTLDIVA++ D+FRVV LAAG N+  L  Q+++F+P++V++ +   L E++ ALA++ +KP+++AGE G+   A + DA  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIAGGP VLPL  ++ +K+LPADSEHSAIFQC+Q
Sbjct:   20 KALNLLGSTGSIGTQTLDIVAQYPDRFRVVGLAAGRNLERLIPQIRQFQPEIVSIADPEQLPELEAALADLPQKPQLVAGEAGIAAVAAYGDAEVVVTGIVGCAGLVPTIAAIKAGKDIALANKETLIAGGPVVLPLLQEYGVKLLPADSEHSAIFQCLQ 179          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 4.174e-53
Identity = 99/158 (62.66%), Postives = 128/158 (81.01%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            I++LGSTGSIGTQTLD+VA++ ++FRVV L + SN+TLLA+QV RF+PQ+VA+  E LL E++  L  +   PE++AG +G+ + A HP A  VVTGIVGCAGL PT+AAI AGKDIALANKETL+AGGP VLPL  ++ +K++P DSEHSAIFQC+Q
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFRVVGLTSYSNVTLLAEQVWRFRPQIVAIGREELLPELRSLLTGMRPLPELVAGTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDIALANKETLVAGGPVVLPLVREYGVKLIPVDSEHSAIFQCLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SYNJB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. GN=dxr PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.615e-52
Identity = 96/158 (60.76%), Postives = 127/158 (80.38%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            I++LGSTGSIGTQTLD+VA++ ++F+VV L + SN+ LLA+QV+RF+PQ+VA+  E LL E++  L  +   PE++AG +G+ + A HP A  VVTGIVGCAGL PT+AAI AGKDIALANKETL+AGGP VLPL  ++ + ++P DSEHSAIFQC+Q
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVAGTEGLCQVAAHPAAQRVVTGIVGCAGLLPTLAAIRAGKDIALANKETLVAGGPVVLPLVREYGVNLIPVDSEHSAIFQCLQ 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PROM9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxr PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 6.237e-49
Identity = 97/162 (59.88%), Postives = 128/162 (79.01%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE--EKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I+VLGSTGSIGTQTL+I +E  DKF+ VAL+AG NITLL +QVK  KP+VVA+ +E+L++++K+ + N++    P +L G++G+   A    A TV+TGIVGCAGL PT++AI AGK+IALANKETLIA GP V+P   K+N ++LPADSEHSAIFQC+Q
Sbjct:    2 KYITVLGSTGSIGTQTLEIASEQPDKFKAVALSAGRNITLLTEQVKTHKPEVVAIEDENLIEDLKDNINNLDLDSAPLVLGGKEGINAVAAWDKADTVITGIVGCAGLIPTMSAINAGKNIALANKETLIAAGPIVIPALKKNNSRLLPADSEHSAIFQCLQ 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_GLOVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Gloeobacter violaceus GN=dxr PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 92/160 (57.50%), Postives = 119/160 (74.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I++LGSTGSIGTQTLDIVAE+ ++F V  + A SN+ LLA+Q++RF+PQVVAV +E+    +   LA  +  PE+  GE+G    A    A  VVTGIVGCAGL PT+AA++AG+D+ALANKETL+AGGP V+P      +K+LP DSEHSAIFQC+Q
Sbjct:    2 KHIALLGSTGSIGTQTLDIVAEYPERFAVTGMTAHSNMELLAEQIRRFRPQVVAVGSEARRAALAALLAGFDGMPEMFVGEKGCCTVASQAPAEVVVTGIVGCAGLMPTLAAVDAGRDLALANKETLVAGGPVVMPRIRARGVKLLPVDSEHSAIFQCLQ 161          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_CYAP85.268e-5666.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP62.891e-5463.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNE72.891e-5463.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP42.891e-5463.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNY31.098e-5365.221-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEEB4.174e-5361.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJA4.174e-5362.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJB4.615e-5260.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM96.237e-4959.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GLOVI5.838e-4757.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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