FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BIFLO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26
Identity = 66/159 (41.51%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +LGSTGSIGTQ LD+++ H ++F V  LAAG ++I LLA Q  +F    VAV +E+ +  ++ ALA    +   + G    + A     A  V+ GI G  GL+P++AA++AG  +ALANKE+++AGG  +     + N +I P DSEHSAI+Q ++
Sbjct:    9 VIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEVAVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AGRVS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26
Identity = 67/162 (41.36%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            P+ +++LGSTGSIGT TLD++ +    D+F ++AL    N+ LLA+Q      ++    +E+    +K+ L+      ++ AG  G+ EAA   +A  V+  IVG AGL+PT+ A   G DIALANKE L++ G   +    K   KI+P DSEHSAIFQC+
Sbjct:    8 PRRLTILGSTGSIGTNTLDVIRQMGGRDRFDIMALTGHGNVALLAEQALVTGARLAVTSDENQYIALKDLLSG--SGIDVAAGSSGLQEAACL-EADWVMAAIVGTAGLQPTLTAAARGADIALANKECLVSAGELFIETVRKGGGKIIPVDSEHSAIFQCL 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESVV (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dxr PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.266e-25
Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            P+ +++LGSTGSIGT  L +V  H  +FRVVALA   N+  LA Q  R++P+ + V + +   ++++ L      P I  G +G    A  P+A TV++  VG AGL+ T AA   GK I LANKE+L+  G  +          ILP DSEH+AIFQ +Q
Sbjct:   18 PRTLALLGSTGSIGTSALRVVEAHPHRFRVVALAGARNVEKLAAQAARWRPEHLGVLDAAGAAKLRDLLP-AGYAPHIHIGPEGYATMATLPEAGTVLSAQVGAAGLRATEAAARHGKVICLANKESLVLAGDIIRRHCAGSGAVILPVDSEHNAIFQALQ 177          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++  A ++   ILP DSEHSA+FQ +
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAQENGATILPVDSEHSAVFQAL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+ G+TGSIG  T D+V      + FR VAL  G N+  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++  A ++   ILP DSEHSA+FQ +
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNVARLAEMARALKAELAVTAHEECLPALREALAG--SGTEVAGGTQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAEENGATILPVDSEHSAVFQAL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++  A ++   ILP DSEHSA+FQ +
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTARENGATILPVDSEHSAVFQAL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + +S+ G+TGSIG  T D+V      + FR VAL  G NI  LA+  +  K ++    +E  L  ++EALA      E+  G Q + EAA  P A   ++ IVG AGL P + A++ G+ +ALANKE+L+  G  ++  A ++   ILP DSEHSA+FQ +
Sbjct:    2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAEENGATILPVDSEHSAVFQAL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESVH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            P+ +++LGSTGSIGT  L +V  H  +F+VVALA   N+  LA Q  R++P+ + V + +   ++++ L      P I  G +G    A  P+A TV++  VG AGL+ T AA   GK I LANKE+L+  G  +          ILP DSEH+AIFQ +Q
Sbjct:   18 PRTLALLGSTGSIGTSALRVVEAHPHRFKVVALAGARNVEKLAAQAARWRPEHLGVLDATGAAKLRDLLP-AGYAPHIHIGPEGYATMATLPEAGTVLSAQVGAAGLRATEAAARHGKVICLANKESLVLAGDIIRRHCAGSGAVILPVDSEHNAIFQALQ 177          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BIFLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum (strain DJO10A) GN=dxr PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +LGSTGSIGTQ LD+++ H ++F V  LAAG ++I LLA Q  +F     AV +E+ +  ++ ALA    +   + G    + A     A  V+ GI G  GL+P++AA++AG  +ALANKE+++AGG  +     + N +I P DSEHSAI+Q ++
Sbjct:    9 VIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEAAVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_NOCFA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nocardia farcinica GN=dxr PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + +LGSTGSIGTQ L+++A + DKF VV LAA G N  LLA+Q+          RN ++ D    A  +++     LAG   V E  R  +A  V+  +VG  GL+PT+A + AG  +ALANKE+L+AGG  V   A     +I+P DSEHSA+ QC++
Sbjct:   22 VLLLGSTGSIGTQALEVIAANPDKFEVVGLAARGGNPALLAEQMA-----ATGTRNVAVADPAAGAALDIK-----LAGPHAVTELVRRTEADVVLNALVGSLGLEPTLATLTAGTRLALANKESLVAGGSLVTRAAAPG--QIVPVDSEHSALAQCLR 168          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_BIFLO9.690e-2641.511-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AGRVS9.690e-2641.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESVV1.266e-2541.611-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOSK2.819e-2539.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS52.819e-2539.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS42.819e-2539.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOS12.819e-2539.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESVH2.819e-2540.991-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BIFLD2.819e-2540.881-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_NOCFA4.809e-2543.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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