FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BIFLO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum GN=dxr PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26 Identity = 66/159 (41.51%), Postives = 100/159 (62.89%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + +LGSTGSIGTQ LD+++ H ++F V LAAG ++I LLA Q +F VAV +E+ + ++ ALA + + G + A A V+ GI G GL+P++AA++AG +ALANKE+++AGG + + N +I P DSEHSAI+Q ++ Sbjct: 9 VIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEVAVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AGRVS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxr PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26 Identity = 67/162 (41.36%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 7 PKPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 P+ +++LGSTGSIGT TLD++ + D+F ++AL N+ LLA+Q ++ +E+ +K+ L+ ++ AG G+ EAA +A V+ IVG AGL+PT+ A G DIALANKE L++ G + K KI+P DSEHSAIFQC+ Sbjct: 8 PRRLTILGSTGSIGTNTLDVIRQMGGRDRFDIMALTGHGNVALLAEQALVTGARLAVTSDENQYIALKDLLSG--SGIDVAAGSSGLQEAACL-EADWVMAAIVGTAGLQPTLTAAARGADIALANKECLVSAGELFIETVRKGGGKIIPVDSEHSAIFQCL 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESVV (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dxr PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.266e-25 Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 7 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 P+ +++LGSTGSIGT L +V H +FRVVALA N+ LA Q R++P+ + V + + ++++ L P I G +G A P+A TV++ VG AGL+ T AA GK I LANKE+L+ G + ILP DSEH+AIFQ +Q Sbjct: 18 PRTLALLGSTGSIGTSALRVVEAHPHRFRVVALAGARNVEKLAAQAARWRPEHLGVLDAAGAAKLRDLLP-AGYAPHIHIGPEGYATMATLPEAGTVLSAQVGAAGLRATEAAARHGKVICLANKESLVLAGDIIRRHCAGSGAVILPVDSEHNAIFQALQ 177
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 + +S+ G+TGSIG T D+V + FR VAL G NI LA+ + K ++ +E L ++EALA E+ G Q + EAA P A ++ IVG AGL P + A++ G+ +ALANKE+L+ G ++ A ++ ILP DSEHSA+FQ + Sbjct: 2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAQENGATILPVDSEHSAVFQAL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 + +S+ G+TGSIG T D+V + FR VAL G N+ LA+ + K ++ +E L ++EALA E+ G Q + EAA P A ++ IVG AGL P + A++ G+ +ALANKE+L+ G ++ A ++ ILP DSEHSA+FQ + Sbjct: 2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNVARLAEMARALKAELAVTAHEECLPALREALAG--SGTEVAGGTQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAEENGATILPVDSEHSAVFQAL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 + +S+ G+TGSIG T D+V + FR VAL G NI LA+ + K ++ +E L ++EALA E+ G Q + EAA P A ++ IVG AGL P + A++ G+ +ALANKE+L+ G ++ A ++ ILP DSEHSA+FQ + Sbjct: 2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTARENGATILPVDSEHSAVFQAL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHOS1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 + +S+ G+TGSIG T D+V + FR VAL G NI LA+ + K ++ +E L ++EALA E+ G Q + EAA P A ++ IVG AGL P + A++ G+ +ALANKE+L+ G ++ A ++ ILP DSEHSA+FQ + Sbjct: 2 RSLSIFGATGSIGESTFDLVMRKGGPEAFRTVALTGGRNIRRLAEMARALKAELAVTAHEDCLPALREALAGTGT--EVAGGAQAIAEAADRP-ADWTMSAIVGAAGLVPGMRALKHGRTLALANKESLVTAGQLLMRTAEENGATILPVDSEHSAVFQAL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_DESVH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 66/161 (40.99%), Postives = 94/161 (58.39%), Query Frame = 1 Query: 7 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 P+ +++LGSTGSIGT L +V H +F+VVALA N+ LA Q R++P+ + V + + ++++ L P I G +G A P+A TV++ VG AGL+ T AA GK I LANKE+L+ G + ILP DSEH+AIFQ +Q Sbjct: 18 PRTLALLGSTGSIGTSALRVVEAHPHRFKVVALAGARNVEKLAAQAARWRPEHLGVLDATGAAKLRDLLP-AGYAPHIHIGPEGYATMATLPEAGTVLSAQVGAAGLRATEAAARHGKVICLANKESLVLAGDIIRRHCAGSGAVILPVDSEHNAIFQALQ 177
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BIFLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bifidobacterium longum (strain DJO10A) GN=dxr PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.819e-25 Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + +LGSTGSIGTQ LD+++ H ++F V LAAG ++I LLA Q +F AV +E+ + ++ ALA + + G + A A V+ GI G GL+P++AA++AG +ALANKE+++AGG + + N +I P DSEHSAI+Q ++ Sbjct: 9 VIILGSTGSIGTQGLDVISRHPERFTVTGLAAGGAHIELLAQQAAQFHVSEAAVFDETKVPALQAALAQAGAQGVRVTGGPDSVIAMAGSGANVVLNGITGSIGLEPSIAALKAGSQLALANKESVVAGGHLLFSAQVREN-QINPVDSEHSAIWQSLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_NOCFA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nocardia farcinica GN=dxr PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25 Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + +LGSTGSIGTQ L+++A + DKF VV LAA G N LLA+Q+ RN ++ D A +++ LAG V E R +A V+ +VG GL+PT+A + AG +ALANKE+L+AGG V A +I+P DSEHSA+ QC++ Sbjct: 22 VLLLGSTGSIGTQALEVIAANPDKFEVVGLAARGGNPALLAEQMA-----ATGTRNVAVADPAAGAALDIK-----LAGPHAVTELVRRTEADVVLNALVGSLGLEPTLATLTAGTRLALANKESLVAGGSLVTRAAAPG--QIVPVDSEHSALAQCLR 168 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |