FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_COREF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium efficiens GN=dxr PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 5.317e-24 Identity = 69/163 (42.33%), Postives = 103/163 (63.19%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRF--KPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPD-AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 I +LGSTGSIGTQ L+++A++ D F +V +AAG SN L+ +Q + F +P VAV + E+ EAL V + P+ Q ++E+ + D A V+ +VG GL T+A + +G +ALANKE+L+AGG FV+ A +I+P DSEHSA+ QC++ Sbjct: 8 ILILGSTGSIGTQALEVIADNPDLFTLVGIAAGGSNPGLVIEQARAFNLRPHQVAVAGKQAAGEVGEALGGTVIDGPD---AAQTLVESVQATDPADAVLNALVGSMGLGATLATLRSGAHLALANKESLVAGGEFVMAQARPG--QIIPVDSEHSAMAQCLR 165
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMC5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter curvus (strain 525.92) GN=dxr PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.317e-24 Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEH 465 +LGSTGSIGT TL+I + H V AL+ NI LL +Q+ RF+P+ V V +ESL E+K + +K +I G G++E + VV IVG AGL P++ E GK +ALANKE+L+AGG F+ KI P DSEH Sbjct: 3 ILGSTGSIGTNTLEICSRHG--VSVEALSCAKNIALLNEQIARFRPKFVCVADESLASEVK-----ILKKSQIFVGAGGLLEMLEACHSQKVVNAIVGFAGLAPSLKTQELGKSLALANKESLVAGGKFL------DTAKISPIDSEH 137
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium smegmatis GN=dxr PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.944e-24 Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 1 Query: 4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 G + + +LGSTGSIGTQ L+++A + D+F VV LAAG N LLA Q + VAV + + EA+ +V +G V +A V+ +VG GL+PT+AA+ G +ALANKE+L+AGGP VL A +I+P DSEHSA+ QC++ Sbjct: 11 GRQRVLILGSTGSIGTQALEVIAANPDRFEVVGLAAGGGNPELLAAQRAQTGVAAVAVADPAAA----EAVGDVR-----YSGPDAVTRLVEDTEADVVLNALVGALGLQPTLAALATGARLALANKESLVAGGPLVLKAAAPG--QIVPVDSEHSAMAQCLR 162
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AGRRK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxr PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 6.944e-24 Identity = 66/160 (41.25%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 +++LGSTGSIG TLD++A+ D F + A+ NI LLA Q K + NE +K+ALA AG +IEAA P V+ IVG AGL PT+ A G DIALANKE L++ G + + +++P DSEHSAIFQ ++ Sbjct: 11 LTILGSTGSIGQNTLDVIAQLGGRDAFEIAAITGHDNIDLLASQAKACGAALAVTANEDRYQALKDALAGTGIAAA--AGRNALIEAASIPSD-WVMAAIVGTAGLAPTLEAARRGADIALANKECLVSAGDLFVRAVAEGGGRLIPVDSEHSAIFQALE 167
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEAM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxr PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24 Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TLD++ + +++R AL A +++ + D +P+ + +ES + +AL E+ +G++ ++ + TV+ IVG AGL PT+AA+ AGK + LANKE L+ G + K ++LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGKSTLDVIKRNPERYRAFALVAATSVERMRDLCIEHRPRYAHMVDESAAKRLADALPT-GLGIEVSSGDEALLGLVTAAEVDTVMAAIVGAAGLLPTLAAVRAGKRVLLANKEALVMSGELFMEETKKSGAQLLPVDSEHNAIFQCL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EHRRG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Gardel) GN=dxr PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24 Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 K +S+ GSTG+IG +D++ D ++V AL A SN+ LLA Q K ++V + + L E+K+ L K I G+ G ++ A + V+ IVG A L P V I AG K IALANKE+++ GG + LA + N+ I+P DSEH+AIFQ + Sbjct: 2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKVVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVG-MQMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGGTLLFNLAREKNVNIIPVDSEHNAIFQIL 158
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANCP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris GN=dxr PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23 Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 ++V G+TGSIG LD++A H ++ R L+AGS + L +P + + +L +++ L + AG+Q + A TVV IVG AGL T+AA AGK + LANKE+L+ G + A +I+P DSEHSAIFQC++ Sbjct: 9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANC8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dxr PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23 Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 ++V G+TGSIG LD++A H ++ R L+AGS + L +P + + +L +++ L + AG+Q + A TVV IVG AGL T+AA AGK + LANKE+L+ G + A +I+P DSEHSAIFQC++ Sbjct: 9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEPW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxr PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23 Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TL++V + +++RV AL A +N+ + + +P V + N E+K L + E E+ GE ++ + TV+ IVG AGL T+AA++AGK + LANKE+L+ G + +LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGASTLNVVKCNHEQYRVFALVANTNVAKMLEICIEHRPLVAHMVNAQAATELKRLLPS-ELAIEVTTGEDELLSLVSCAEVDTVMAAIVGAAGLPSTLAAVKAGKRVLLANKESLVMSGQLFIEAMQSSGATVLPVDSEHNAIFQCL 159
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEHH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxr PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23 Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 +LG+TGSIG TL +VA + ++++V AL A +N+ + + +P++ + + +K+ L + + E+ GE ++ D TV+ IVG AGL T+AA+ AGK + LANKE+L+ G + K ++LP DSEH+AIFQC+ Sbjct: 6 ILGATGSIGASTLSVVACNPEQYKVYALVANTNVAKMLEICIAHQPKIAHMVDAQAAQSLKQQLPSHLDI-EVTTGEDELLSLVSSSDVDTVMAAIVGAAGLPSTLAAVNAGKRVLLANKESLVMSGQLFIEAMQKSGAQVLPVDSEHNAIFQCL 159 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |