FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_COREF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium efficiens GN=dxr PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.317e-24
Identity = 69/163 (42.33%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRF--KPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPD-AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            I +LGSTGSIGTQ L+++A++ D F +V +AAG SN  L+ +Q + F  +P  VAV  +    E+ EAL   V + P+     Q ++E+ +  D A  V+  +VG  GL  T+A + +G  +ALANKE+L+AGG FV+  A     +I+P DSEHSA+ QC++
Sbjct:    8 ILILGSTGSIGTQALEVIADNPDLFTLVGIAAGGSNPGLVIEQARAFNLRPHQVAVAGKQAAGEVGEALGGTVIDGPD---AAQTLVESVQATDPADAVLNALVGSMGLGATLATLRSGAHLALANKESLVAGGEFVMAQARPG--QIIPVDSEHSAMAQCLR 165          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMC5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter curvus (strain 525.92) GN=dxr PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.317e-24
Identity = 66/148 (44.59%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEH 465
            +LGSTGSIGT TL+I + H     V AL+   NI LL +Q+ RF+P+ V V +ESL  E+K     + +K +I  G  G++E      +  VV  IVG AGL P++   E GK +ALANKE+L+AGG F+         KI P DSEH
Sbjct:    3 ILGSTGSIGTNTLEICSRHG--VSVEALSCAKNIALLNEQIARFRPKFVCVADESLASEVK-----ILKKSQIFVGAGGLLEMLEACHSQKVVNAIVGFAGLAPSLKTQELGKSLALANKESLVAGGKFL------DTAKISPIDSEH 137          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCS2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium smegmatis GN=dxr PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.944e-24
Identity = 69/163 (42.33%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            G + + +LGSTGSIGTQ L+++A + D+F VV LAAG  N  LLA Q  +     VAV + +      EA+ +V       +G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGGP VL  A     +I+P DSEHSA+ QC++
Sbjct:   11 GRQRVLILGSTGSIGTQALEVIAANPDRFEVVGLAAGGGNPELLAAQRAQTGVAAVAVADPAAA----EAVGDVR-----YSGPDAVTRLVEDTEADVVLNALVGALGLQPTLAALATGARLALANKESLVAGGPLVLKAAAPG--QIVPVDSEHSAMAQCLR 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AGRRK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxr PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.944e-24
Identity = 66/160 (41.25%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            +++LGSTGSIG  TLD++A+    D F + A+    NI LLA Q K     +    NE     +K+ALA         AG   +IEAA  P    V+  IVG AGL PT+ A   G DIALANKE L++ G   +    +   +++P DSEHSAIFQ ++
Sbjct:   11 LTILGSTGSIGQNTLDVIAQLGGRDAFEIAAITGHDNIDLLASQAKACGAALAVTANEDRYQALKDALAGTGIAAA--AGRNALIEAASIPSD-WVMAAIVGTAGLAPTLEAARRGADIALANKECLVSAGDLFVRAVAEGGGRLIPVDSEHSAIFQALE 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEAM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dxr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TLD++  + +++R  AL A +++  + D     +P+   + +ES    + +AL       E+ +G++ ++      +  TV+  IVG AGL PT+AA+ AGK + LANKE L+  G   +    K   ++LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGKSTLDVIKRNPERYRAFALVAATSVERMRDLCIEHRPRYAHMVDESAAKRLADALPT-GLGIEVSSGDEALLGLVTAAEVDTVMAAIVGAAGLLPTLAAVRAGKRVLLANKEALVMSGELFMEETKKSGAQLLPVDSEHNAIFQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EHRRG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Gardel) GN=dxr PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.069e-24
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+ GSTG+IG   +D++    D ++V AL A SN+ LLA Q K    ++V + +  L  E+K+ L     K  I  G+ G ++ A   +   V+  IVG A L P V  I AG K IALANKE+++ GG  +  LA + N+ I+P DSEH+AIFQ +
Sbjct:    2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKVVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVG-MQMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGGTLLFNLAREKNVNIIPVDSEHNAIFQIL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANCP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANC8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L       +  AG+Q +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++
Sbjct:    9 VAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDALLALCVLHRPAHAVIADAALYPALRDGLRAAGLTTQAHAGDQALDALAASDACDTVVAAIVGAAGLSSTLAAAAAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEPW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 58/155 (37.42%), Postives = 89/155 (57.42%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL++V  + +++RV AL A +N+  + +     +P V  + N     E+K  L + E   E+  GE  ++      +  TV+  IVG AGL  T+AA++AGK + LANKE+L+  G   +         +LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGASTLNVVKCNHEQYRVFALVANTNVAKMLEICIEHRPLVAHMVNAQAATELKRLLPS-ELAIEVTTGEDELLSLVSCAEVDTVMAAIVGAAGLPSTLAAVKAGKRVLLANKESLVMSGQLFIEAMQSSGATVLPVDSEHNAIFQCL 159          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEHH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella halifaxensis (strain HAW-EB4) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 56/155 (36.13%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL +VA + ++++V AL A +N+  + +     +P++  + +      +K+ L +  +  E+  GE  ++      D  TV+  IVG AGL  T+AA+ AGK + LANKE+L+  G   +    K   ++LP DSEH+AIFQC+
Sbjct:    6 ILGATGSIGASTLSVVACNPEQYKVYALVANTNVAKMLEICIAHQPKIAHMVDAQAAQSLKQQLPSHLDI-EVTTGEDELLSLVSSSDVDTVMAAIVGAAGLPSTLAAVNAGKRVLLANKESLVMSGQLFIEAMQKSGAQVLPVDSEHNAIFQCL 159          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_COREF5.317e-2442.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMC55.317e-2444.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCS26.944e-2442.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AGRRK6.944e-2441.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEAM9.069e-2436.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRRG9.069e-2440.631-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANCP1.184e-2337.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANC81.184e-2337.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEPW1.184e-2337.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEHH1.184e-2336.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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