FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHIE6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CIAT 652) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 66/164 (40.24%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            P+ +S+ GSTGSIG  TL++V EH    D F +  L    N+ LLA Q K    ++    ++   D +K AL+       + +G+ G++EAA   +A  V+  IVG AGL PT+AA   G DIALANKE L++ G   L    +   ++LP DSEH+AIFQ ++
Sbjct:    8 PRRLSIFGSTGSIGRNTLNVV-EHLGGRDNFEISVLTGNGNVELLARQAKASGARLAVTASDRHYDSLKSALSG--SGIAVASGKSGLMEAA-DCEADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFLKSIREGGGRLLPVDSEHNAIFQVLE 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EHRRW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia ruminantium (strain Welgevonden) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.184e-23
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +S+ GSTG+IG   +D++    D ++V AL A SN+ LLA Q K    ++V + +  L  E+K+ L     K  I  G+ G ++ A   +   V+  IVG A L P V  I AG K IALANKE+++ GG  +  LA + N+ ++P DSEH+AIFQ +
Sbjct:    2 KTVSIFGSTGAIGQMIIDVILASSDSYQVKALVAKSNVQLLAFQAKIVNAEMVVIADVGLYKELKDLLFGTNVK--ISVGDVG-MQMAASLNVDYVMMAIVGIAALVPMVYLISAGVKVIALANKESVVCGGTLLFNLAREKNVNVIPVDSEHNAIFQIL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium paratuberculosis GN=dxr PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + VLGSTGSIGTQ L ++A + D+F VV LAAG +N+ TLL  + +        V N ++ DE   A     + P    G +         +A  V+  +VG  GL+PT+AA+E+G  +ALANKE+LIAGGP VL  A     +I+P DSEHSA+ QC++
Sbjct:   16 VLVLGSTGSIGTQALQVIAANPDRFEVVGLAAGGANLDTLLRQRAE------TGVTNVAVADE--HAARRAGDIP--FCGPEAATRLVEETEADVVLNALVGALGLRPTLAALESGARLALANKESLIAGGPLVLAAAAPG--QIVPVDSEHSALAQCLR 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCA1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium avium (strain 104) GN=dxr PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + VLGSTGSIGTQ L ++A + D+F VV LAAG +N+ TLL  + +        V N ++ DE   A     + P    G +         +A  V+  +VG  GL+PT+AA+E+G  +ALANKE+LIAGGP VL  A     +I+P DSEHSA+ QC++
Sbjct:   16 VLVLGSTGSIGTQALQVIAANPDRFEVVGLAAGGANLDTLLRQRAE------TGVTNVAVADE--HAARRAGDIP--FCGPEAATRLVEETEADVVLNALVGALGLRPTLAALESGARLALANKESLIAGGPLVLAAAAPG--QIVPVDSEHSALAQCLR 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CORGL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium glutamicum GN=dxr PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.020e-23
Identity = 69/163 (42.33%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKR--FKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I +LGSTGSIGTQ LD++A++ DKF VV +AA GS   L+  Q ++       VAV +      I +AL       EI++G            A TV+  +VG  GL  T+A +E+G  +ALANKE+L+AGG FV   A     +I+P DSEHSA+ QC++
Sbjct:    6 KKILILGSTGSIGTQALDVIADNSDKFEVVGIAAGGSQPDLVISQAQQLGLAADKVAVADAQAAAVISKALGG-----EIISGTDAAKILVETTKADTVLNALVGSLGLAATLATLESGAHLALANKESLVAGGEFVTSKAKLG--QIIPVDSEHSAMAQCLR 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PSYA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            I+VLG+TGSIG  TL I+A     + V AL+    +  L    ++F P+ V V   ++ D+  + L+      E++ G+ G+++ A      TVV  IVG AGL  T+AA  AGK I LANKE L+  G  ++     H+  +LP DSEH+AIFQC+
Sbjct:    7 IAVLGATGSIGDSTLAILAAQPQYYDVYALSGYHRLDKLLALCQQFAPKRVGVPTTAV-DDFAKRLSAAGLDIEVVGGDAGLVDIATDSQTDTVVAAIVGAAGLPSTLAAARAGKRILLANKEALVMAGQVMINAVKTHHATLLPLDSEHNAIFQCL 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_EHRCJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ehrlichia canis (strain Jake) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +SV GSTG+IG   +DI+    DK++V  L A SNI LLA Q K    + V + + +L  E+K+ L +   K  + AG+ G+I  A   D    +  IVG A L P    I +  K IALANKE+++ GG  +L LA + ++KI+P DSEH+AI+Q +
Sbjct:    2 KTVSVFGSTGAIGQMIIDIIFSELDKYQVKVLVAKSNIQLLAFQAKLVNAERVVITDVNLYRELKDLLLDTNIK--VSAGDDGMI-MATSLDVDYAMMAIVGIAALVPMTYLINSNVKVIALANKESIVCGGALLLSLAKEKDVKIIPLDSEHNAIYQIL 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CORGB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium glutamicum (strain R) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKR--FKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K I +LGSTGSIGTQ LD++A++ DKF VV +AA GS   L+  Q ++       VAV +      + +AL       EI++G            A TV+  +VG  GL  T+A +E+G  +ALANKE+L+AGG FV   A     +I+P DSEHSA+ QC++
Sbjct:    6 KKILILGSTGSIGTQALDVIADNSDKFEVVGIAAGGSQPDLVISQAQQLGLAADKVAVADAQAAAVVSKALGG-----EIISGTDAAKILVETTKADTVLNALVGSLGLAATLATLESGAHLALANKESLVAGGEFVTSKAKLG--QIIPVDSEHSAMAQCLR 161          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CARHZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.639e-23
Identity = 69/163 (42.33%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPE---ILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            K + +LGSTGSIG Q+L+++    DKF VVALAA  N  LL +Q  RFK     V++  L DE        E K     +  G + ++  A  P    ++T I G   L PT+ A++AGK I LANKET++A G  + PL  K    +LP DSEHSAIFQ ++
Sbjct:    2 KKLVILGSTGSIGRQSLEVIEFFPDKFSVVALAAAKNGKLLLEQCLRFK-----VKHAFLADEESYKTYYQEFKNHGILLTTGSKELLNLALLPGVDGIITAIPGTICLLPTIEALKAGKIIYLANKETMVAAGEIITPLM-KLGENLLPVDSEHSAIFQALR 158          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_SHEWM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dxr PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.446e-23
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            +LG+TGSIG  TL ++A + + + V AL A +N+  +    ++++P+V  + +E     ++E L+    K E+  GE  +          TV+  IVG AGL PT+AA++AGK + LANKE+L+  G   +    K   ++LP DSEH+AIFQ +
Sbjct:    6 ILGATGSIGASTLSVIASNPETYSVYALVANTNVDKMMALCEQYRPKVAHMVDEQAAKSLQERLSP-SLKIEVTTGESQLESIVTSSCVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSGRLFIEEMKKSGAQVLPVDSEHNAIFQAL 159          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_RHIE61.184e-2340.241-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRRW1.184e-2340.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCPA1.547e-2343.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCA11.547e-2343.131-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORGL2.020e-2342.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYA22.639e-2339.491-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EHRCJ2.639e-2341.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORGB2.639e-2341.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CARHZ2.639e-2342.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEWM3.446e-2336.771-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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