FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A     +I+P DSEHSA+ QC++
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A     +I+P DSEHSA+ QC++
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis GN=dxr PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            DG   + VLGSTGSIGTQ L ++A++ D+F VV LAAG       D + R + Q   V N ++ DE   A   V + P    G           +A  V+  +VG  GL+PT+AA++ G  +ALANKE+L+AGG  VL  A     +I+P DSEHSA+ QC++
Sbjct:   10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANOR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=dxr PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANOM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dxr PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22
Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + ++V G+TGSIG   LD++A H ++ R   L+AGS +  L       +P    + + +L   +++ L  +    +  AG + +   A      TVV  IVG AGL  T+AA  AGK + LANKE+L+  G  +   A     +I+P DSEHSAIFQC++
Sbjct:    7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLR 166          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PSYIN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychromonas ingrahamii (strain 37) GN=dxr PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22
Identity = 54/159 (33.96%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K +++LG+TGSIG  TL +   + + +++  LAA S++  +    + F P  V++ +E    +++  L        +L  EQ ++E        +V+  IVG AGLK T+AA++AGK++ LANKE L+  G   +    K   K+ P DSEH+AI+Q +
Sbjct:    2 KKLAILGATGSIGDSTLSVCRSNPELYQITLLAASSSVDKMLALCREFTPLYVSMSSEISAKKLRGLLKRNNLSCHVLDDEQRLLELLASDHVDSVMAAIVGAAGLKTTLAAVDAGKEVFLANKEALVMSGALFIDAVKKSGAKLWPVDSEHNAIYQAL 160          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHIL3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 62/164 (37.80%), Postives = 93/164 (56.71%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            P+ +S+ GSTGSIG  TL++V +H    + F +  L    N+ LLA Q K    ++    N+   + +K  L+       + +G+ G++EAA   D   V+  IVG AGL PT+AA   G DIALANKE L++ G   +    +   ++LP DSEH+AIFQ ++
Sbjct:    8 PRRLSIFGSTGSIGQNTLNVV-DHLGGRENFEISVLTGSGNVELLARQAKSSGARLAVTANDRHYESLKSELSGTGIA--VASGKSGLMEAADR-DVDWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIAAIREGGGRLLPVDSEHNAIFQVLE 167          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_ANAMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain St. Maries) GN=dxr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            G K +SV GSTG IG + + I+ ++ D F VVAL A  +  LLA Q +     +  V  ++  + ++E L       E+ AG  GV++AA   D  + V  I G A L P +  I++G K IALANKE+++ GG  ++  A +  + I+P DSEH+A+FQ +
Sbjct:    5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQIL 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_ANAMF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain Florida) GN=dxr PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22
Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            G K +SV GSTG IG + + I+ ++ D F VVAL A  +  LLA Q +     +  V  ++  + ++E L       E+ AG  GV++AA   D  + V  I G A L P +  I++G K IALANKE+++ GG  ++  A +  + I+P DSEH+A+FQ +
Sbjct:    5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQIL 163          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHIEC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxr PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 1
Query:    7 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            P+ +S+ GSTGSIG  TL+++ EH    + F +  L    N+ LLA Q +    ++    ++   + +K  L+       + +G+ G++EAA   DA  V+  IVG AGL PT+AA   G DIALANKE L++ G   +    +   ++LP DSEH+AIFQ ++
Sbjct:    8 PRRLSIFGSTGSIGRNTLNVI-EHLGGRENFEISVLTGNGNVELLARQARSSGARLAVTASDRHYESLKRELSG--SGIAVASGKSGLMEAADR-DADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIKAIREGGGRLLPVDSEHNAIFQVLE 167          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_MYCBT7.678e-2341.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCBP7.678e-2341.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCBO7.678e-2341.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOR1.003e-2236.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_XANOM1.003e-2236.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSYIN1.310e-2233.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIL31.710e-2237.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAMM1.710e-2237.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAMF1.710e-2237.651-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHIEC2.918e-2237.201-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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