FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxr PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23 Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R + Q V N ++ DE A V + P G +A V+ +VG GL+PT+AA++ G +ALANKE+L+AGG VL A +I+P DSEHSA+ QC++ Sbjct: 10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxr PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23 Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R + Q V N ++ DE A V + P G +A V+ +VG GL+PT+AA++ G +ALANKE+L+AGG VL A +I+P DSEHSA+ QC++ Sbjct: 10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_MYCBO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium bovis GN=dxr PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.678e-23 Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 1 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R + Q V N ++ DE A V + P G +A V+ +VG GL+PT+AA++ G +ALANKE+L+AGG VL A +I+P DSEHSA+ QC++ Sbjct: 10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLR 162
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANOR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae GN=dxr PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22 Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + ++V G+TGSIG LD++A H ++ R L+AGS + L +P + + +L +++ L + + AG + + A TVV IVG AGL T+AA AGK + LANKE+L+ G + A +I+P DSEHSAIFQC++ Sbjct: 7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_XANOM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=dxr PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.003e-22 Identity = 58/160 (36.25%), Postives = 88/160 (55.00%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + ++V G+TGSIG LD++A H ++ R L+AGS + L +P + + +L +++ L + + AG + + A TVV IVG AGL T+AA AGK + LANKE+L+ G + A +I+P DSEHSAIFQC++ Sbjct: 7 RQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVEDLLALCAAHQPAHALIADAALYPALRDGLRALGLATQAHAGAEALDALAGSDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTATAAGAEIIPIDSEHSAIFQCLR 166
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PSYIN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Psychromonas ingrahamii (strain 37) GN=dxr PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.310e-22 Identity = 54/159 (33.96%), Postives = 90/159 (56.60%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 K +++LG+TGSIG TL + + + +++ LAA S++ + + F P V++ +E +++ L +L EQ ++E +V+ IVG AGLK T+AA++AGK++ LANKE L+ G + K K+ P DSEH+AI+Q + Sbjct: 2 KKLAILGATGSIGDSTLSVCRSNPELYQITLLAASSSVDKMLALCREFTPLYVSMSSEISAKKLRGLLKRNNLSCHVLDDEQRLLELLASDHVDSVMAAIVGAAGLKTTLAAVDAGKEVFLANKEALVMSGALFIDAVKKSGAKLWPVDSEHNAIYQAL 160
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHIL3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22 Identity = 62/164 (37.80%), Postives = 93/164 (56.71%), Query Frame = 1 Query: 7 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 P+ +S+ GSTGSIG TL++V +H + F + L N+ LLA Q K ++ N+ + +K L+ + +G+ G++EAA D V+ IVG AGL PT+AA G DIALANKE L++ G + + ++LP DSEH+AIFQ ++ Sbjct: 8 PRRLSIFGSTGSIGQNTLNVV-DHLGGRENFEISVLTGSGNVELLARQAKSSGARLAVTANDRHYESLKSELSGTGIA--VASGKSGLMEAADR-DVDWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIAAIREGGGRLLPVDSEHNAIFQVLE 167
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_ANAMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain St. Maries) GN=dxr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22 Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 G K +SV GSTG IG + + I+ ++ D F VVAL A + LLA Q + + V ++ + ++E L E+ AG GV++AA D + V I G A L P + I++G K IALANKE+++ GG ++ A + + I+P DSEH+A+FQ + Sbjct: 5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQIL 163
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_ANAMF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaplasma marginale (strain Florida) GN=dxr PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.710e-22 Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 4 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 G K +SV GSTG IG + + I+ ++ D F VVAL A + LLA Q + + V ++ + ++E L E+ AG GV++AA D + V I G A L P + I++G K IALANKE+++ GG ++ A + + I+P DSEH+A+FQ + Sbjct: 5 GRKRVSVFGSTGCIGQKAVQILRDNPDDFEVVALVAKQDAHLLASQARLLSANMAVVAEDAAYETLRELLRGT--CVEVGAGTAGVMDAASR-DVDSAVMAITGIAALHPVIRLIKSGVKSIALANKESVVCGGELLINAAKQTGVNIVPVDSEHNAVFQIL 163
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_RHIEC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxr PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.918e-22 Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 1 Query: 7 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 P+ +S+ GSTGSIG TL+++ EH + F + L N+ LLA Q + ++ ++ + +K L+ + +G+ G++EAA DA V+ IVG AGL PT+AA G DIALANKE L++ G + + ++LP DSEH+AIFQ ++ Sbjct: 8 PRRLSIFGSTGSIGRNTLNVI-EHLGGRENFEISVLTGNGNVELLARQARSSGARLAVTASDRHYESLKRELSG--SGIAVASGKSGLMEAADR-DADWVMAAIVGTAGLAPTLAAARRGADIALANKECLVSAGDLFIKAIREGGGRLLPVDSEHNAIFQVLE 167 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |