FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_FERNB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=dxr PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17 Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480 K + +LG+TGSIGTQ++D++++ ++ +++V ++ G N L + V+RF ++K VE G + PD + I G G+K T+ A++ + IALA KE+++ G FV LA K+N++I+P DSEHSAIFQ Sbjct: 4 KTVVILGATGSIGTQSVDVISKLKN-YKLVGISFGKNRNLAEEIVQRF--------------DVKVYHGGVELSVGRRVDSIGALLELTKPDIT--ICAIPGFEGVKATIEALKYTRRIALATKESMVCAGKFVKELAKKNNVEIVPVDSEHSAIFQ 143
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AQUAE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aquifex aeolicus GN=dxr PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17 Identity = 51/157 (32.48%), Postives = 87/157 (55.41%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 + VLGSTGS+G+QTL + D+ +V + A L Q K++KP+ V S + KE L ++ E + L G++G+ A ++ ++ I G G+KP I+AGK + +NKE+++ G + K+ +++P DSEH+A+FQ + Sbjct: 3 LGVLGSTGSVGSQTLQVYENFRDEIELVGILANRASEKLLQQAKKYKPKYVV----SYQEPAKEWLESLPEGVKYLKGDEGL--KAIIEESERLMNAISGIYGIKPAYEVIKAGKTLLASNKESILCLGEII----RKNRERVIPVDSEHNALFQLL 149
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxr PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17 Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + + +LG+TGSIGTQTLD++ + + R++ ++ SN+ L VK F + VAV + E +++ NV + P + + ++EA + PD V + G +GL+ ++++E K + LANKE+L+ GG V + +++P DSEHSAIFQ I+ Sbjct: 4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAVTGDV---EFEDSSINVWKGPHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLSSLEHSKRVCLANKESLVCGGFLVKKKLKEKRTELIPVDSEHSAIFQVIE 153
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CORJK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=dxr PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17 Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 1 Query: 16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQG------------VIEAA--RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + VLGSTGSIGTQ L+++A++ ++F +V ++A GS +LA QV+ F LD + A+A+ E E L GE G ++EA + ++ +VG GL T+A + +ALANKE+L+AGG VL A + +++P DSEHSA+ QC++ Sbjct: 20 VVVLGSTGSIGTQALEVMADNPERFELVGISAHGSKPDVLAQQVRDFG-----------LDLGRVAVAS-EHTAEWLDGEFGAHCIRGKDSARELVEAVGPELGECDVILNALVGSLGLDATLATLGTKAKLALANKESLVAGGQLVLKAADEG--QLIPVDSEHSAMAQCLR 178
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMHC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxr PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.402e-16 Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEH 465 VLGSTGSIGT +L+I + V ALA N+ L Q+ F P+ V +++E L ++ +I +GE G+ E ++ TV+ +VG AGL P++ +GK + L+NKE+L+ GG F+ KI DSEH Sbjct: 3 VLGSTGSIGTNSLEIARKFN--IEVEALACAENVKKLNAQIAEFHPKFVYIKDEKLKSKVAHN--------KIFSGENGICEMLNRCESKTVINALVGFAGLIPSLKIQNSGKILCLSNKESLVVGGKFL------DTSKIRAIDSEH 134
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELHP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter hepaticus GN=dxr PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477 +LGSTGSIGT L+ VA H D + +L AG NITLL Q+ + P+ V + +++ +A + ++ G +G++E + ++ +VG AGLKP+ A++ K +ALANKE+L+ G + N I P DSEH ++ Sbjct: 3 LLGSTGSIGTNALE-VASHFD-IPIESLCAGKNITLLNQQIAHYAPKNVCIADKN------DAHKLINGNYKLFFGSEGILEMIESSHSHLLLNALVGFAGLKPSFKALQCNKKLALANKESLVNAGWLL------QNADITPIDSEHFGLW 140
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga maritima GN=dxr PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16 Identity = 54/160 (33.75%), Postives = 94/160 (58.75%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 + + +LG+TGSIGTQTLD++ + + R++ ++ SN+ L VK F + VA+ + E +++ NV + + + ++EA + PD V + G +GL+ +A++E K + LANKE+L+ GG V + +++P DSEHSAIFQ ++ Sbjct: 4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAITGDV---EFEDSSINVWKGSHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME 153
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori GN=dxr PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15 Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + + AL+ G NI L+ +Q++ FKP+ VA+ + S L++++ A E+ G +G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLNDLEPLGA------EVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori J99 GN=dxr PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15 Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + K + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++ A E+ G G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKFGVK--IEALSCGKNIALINEQIKVFKPKKVAILDPNDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVINAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPVDSEHFGLWALLQ 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=dxr PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15 Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + + AL+ G NI L+ +Q+K FKP+ VA+ + S L+ ++ A E+ G G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPSDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAGN-LLDIS-----QITPVDSEHFGLWALLQ 144 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |