FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_FERNB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 54/157 (34.39%), Postives = 88/157 (56.05%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480
            K + +LG+TGSIGTQ++D++++ ++ +++V ++ G N  L  + V+RF              ++K     VE          G +     PD    +  I G  G+K T+ A++  + IALA KE+++  G FV  LA K+N++I+P DSEHSAIFQ
Sbjct:    4 KTVVILGATGSIGTQSVDVISKLKN-YKLVGISFGKNRNLAEEIVQRF--------------DVKVYHGGVELSVGRRVDSIGALLELTKPDIT--ICAIPGFEGVKATIEALKYTRRIALATKESMVCAGKFVKELAKKNNVEIVPVDSEHSAIFQ 143          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_AQUAE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aquifex aeolicus GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 51/157 (32.48%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            + VLGSTGS+G+QTL +     D+  +V + A      L  Q K++KP+ V     S  +  KE L ++ E  + L G++G+   A   ++  ++  I G  G+KP    I+AGK +  +NKE+++  G  +     K+  +++P DSEH+A+FQ +
Sbjct:    3 LGVLGSTGSVGSQTLQVYENFRDEIELVGILANRASEKLLQQAKKYKPKYVV----SYQEPAKEWLESLPEGVKYLKGDEGL--KAIIEESERLMNAISGIYGIKPAYEVIKAGKTLLASNKESILCLGEII----RKNRERVIPVDSEHNALFQLL 149          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 56/160 (35.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + + +LG+TGSIGTQTLD++ + +   R++ ++  SN+ L    VK F  + VAV  +    E +++  NV + P  +   + ++EA + PD   V   + G +GL+  ++++E  K + LANKE+L+ GG  V     +   +++P DSEHSAIFQ I+
Sbjct:    4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAVTGDV---EFEDSSINVWKGPHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLSSLEHSKRVCLANKESLVCGGFLVKKKLKEKRTELIPVDSEHSAIFQVIE 153          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CORJK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 63/173 (36.42%), Postives = 97/173 (56.07%), Query Frame = 1
Query:   16 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQG------------VIEAA--RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + VLGSTGSIGTQ L+++A++ ++F +V ++A GS   +LA QV+ F            LD  + A+A+ E   E L GE G            ++EA      +   ++  +VG  GL  T+A +     +ALANKE+L+AGG  VL  A +   +++P DSEHSA+ QC++
Sbjct:   20 VVVLGSTGSIGTQALEVMADNPERFELVGISAHGSKPDVLAQQVRDFG-----------LDLGRVAVAS-EHTAEWLDGEFGAHCIRGKDSARELVEAVGPELGECDVILNALVGSLGLDATLATLGTKAKLALANKESLVAGGQLVLKAADEG--QLIPVDSEHSAMAQCLR 178          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMHC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.402e-16
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEH 465
            VLGSTGSIGT +L+I  +      V ALA   N+  L  Q+  F P+ V +++E L  ++           +I +GE G+ E     ++ TV+  +VG AGL P++    +GK + L+NKE+L+ GG F+         KI   DSEH
Sbjct:    3 VLGSTGSIGTNSLEIARKFN--IEVEALACAENVKKLNAQIAEFHPKFVYIKDEKLKSKVAHN--------KIFSGENGICEMLNRCESKTVINALVGFAGLIPSLKIQNSGKILCLSNKESLVVGGKFL------DTSKIRAIDSEH 134          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELHP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter hepaticus GN=dxr PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIF 477
            +LGSTGSIGT  L+ VA H D   + +L AG NITLL  Q+  + P+ V + +++      +A   +    ++  G +G++E      +  ++  +VG AGLKP+  A++  K +ALANKE+L+  G  +       N  I P DSEH  ++
Sbjct:    3 LLGSTGSIGTNALE-VASHFD-IPIESLCAGKNITLLNQQIAHYAPKNVCIADKN------DAHKLINGNYKLFFGSEGILEMIESSHSHLLLNALVGFAGLKPSFKALQCNKKLALANKESLVNAGWLL------QNADITPIDSEHFGLW 140          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_THEMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga maritima GN=dxr PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 54/160 (33.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            + + +LG+TGSIGTQTLD++ + +   R++ ++  SN+ L    VK F  + VA+  +    E +++  NV +    +   + ++EA + PD   V   + G +GL+  +A++E  K + LANKE+L+ GG  V     +   +++P DSEHSAIFQ ++
Sbjct:    4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAITGDV---EFEDSSINVWKGSHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME 153          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori GN=dxr PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 54/156 (34.62%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VA+ + S L++++   A      E+  G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLNDLEPLGA------EVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori J99 GN=dxr PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKFGVK--IEALSCGKNIALINEQIKVFKPKKVAILDPNDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVINAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPVDSEHFGLWALLQ 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=dxr PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + S L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPSDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAGN-LLDIS-----QITPVDSEHFGLWALLQ 144          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_FERNB1.657e-1734.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AQUAE2.164e-1732.481-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP12.826e-1735.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORJK4.820e-1736.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMHC1.402e-1635.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELHP1.832e-1634.871-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEMA3.124e-1633.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPY1.187e-1534.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPJ1.187e-1535.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPH2.645e-1535.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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