FC876235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=dxr PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15 Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + K + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++ A V G +G+ + V+ IVG AGL+ + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKF--KVGIEALSCGKNIALINEQIKVFKPKKVAILDSNDLNGLEPLGAKV------FVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKSLQTNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMLR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dxr PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15 Identity = 56/151 (37.09%), Postives = 80/151 (52.98%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 474 VLGSTGSIG TL I E + AL+ G NI LL +Q+ FKP+ V +++E D+ ++ + I + G+ + + VV IVG AGL ++ A + GK +ALANKE+L+ G F KI DSEH+A+ Sbjct: 3 VLGSTGSIGVNTLFIAKEKN--ISIEALSCGKNIKLLNEQIALFKPKFVCIQDEK--DK------HLVDHKNIFCAQDGLKKMISECKSKFVVNAIVGFAGLNSSLIAQKLGKTLALANKESLVVAGKFF------DTSKIKAIDSEHAAL 137
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain P12) GN=dxr PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15 Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + + AL+ G NI L+ +Q+K FKP+ VA+ + + L++++ A V G +G+ + V+ IVG AGLK + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPNDLNDLEPLGAKV------FVGLEGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPVDSEHFGLWALLQ 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BLOFL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Blochmannia floridanus GN=dxr PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14 Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 1 Query: 73 EHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480 ++ DKF V AL A +++ ++ +Q PQ V + E + +K L +++ ++L+G + + VV+ + G A L+P +AI GK I LANKETL+ G + +K+N +LP DSE++AIFQ Sbjct: 7 QYRDKFAVRALVAHNDVAVMIEQCFLVSPQYVCMICEEVARNLKYKLVLMDKNNIQVLSGMKDACVLSALDAVDMVVSTMAGIARLQPIFSAIRVGKKILLANKETLVLSGQLFMTEVYKYNASVLPLDSEYNAIFQ 143
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain G27) GN=dxr PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.313e-14 Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489 VLGSTGSIG L I + + AL+ G NI L+ +Q++ FKP+ VAV + + L+ ++ A E+ G +G+ + V+ IVG AGL+ + +++ K +ALANKE+L++ G +L ++ +I P DSEH ++ +Q Sbjct: 3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIQVFKPKKVAVLDPNDLNNLEPLGA------EVFVGLEGIDAMIEECASNLVLNAIVGVAGLRASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELUB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelagibacter ubique GN=dxr PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12 Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 1 Query: 10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486 K I++ GSTGSIG+ L I+ + + F++ L N L QVK F + V V + + + L N + K + + + + + + I G GLKPT+ I+ K IA+ANKE++I G + K+ +P DSEH +I+ + Sbjct: 2 KKIAIFGSTGSIGSSLLKIIKDDQKNFKIELLTVNKNYKKLIKQVKLFNVKNVIVTDYNSFLITTKLLKNAKVK--VFNNFDSLNKIFNTNNKIDYSMCAISGFDGLKPTLDIIKFTKTIAIANKESIICGWNLIKKDLKKYKTYFVPVDSEHFSIWSLL 159 The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 436
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bpback to top |