FC876235

Overview
NameFC876235
Unique NameFC876235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:404..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A V        G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKF--KVGIEALSCGKNIALINEQIKVFKPKKVAILDSNDLNGLEPLGAKV------FVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKSLQTNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_CAMLR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 56/151 (37.09%), Postives = 80/151 (52.98%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 474
            VLGSTGSIG  TL I  E      + AL+ G NI LL +Q+  FKP+ V +++E   D+      ++ +   I   + G+ +      +  VV  IVG AGL  ++ A + GK +ALANKE+L+  G F          KI   DSEH+A+
Sbjct:    3 VLGSTGSIGVNTLFIAKEKN--ISIEALSCGKNIKLLNEQIALFKPKFVCIQDEK--DK------HLVDHKNIFCAQDGLKKMISECKSKFVVNAIVGFAGLNSSLIAQKLGKTLALANKESLVVAGKFF------DTSKIKAIDSEHAAL 137          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain P12) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + + L++++   A V        G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPNDLNDLEPLGAKV------FVGLEGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPVDSEHFGLWALLQ 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_BLOFL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Blochmannia floridanus GN=dxr PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 1
Query:   73 EHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 480
            ++ DKF V AL A +++ ++ +Q     PQ V +  E +   +K  L  +++   ++L+G +     +       VV+ + G A L+P  +AI  GK I LANKETL+  G   +   +K+N  +LP DSE++AIFQ
Sbjct:    7 QYRDKFAVRALVAHNDVAVMIEQCFLVSPQYVCMICEEVARNLKYKLVLMDKNNIQVLSGMKDACVLSALDAVDMVVSTMAGIARLQPIFSAIRVGKKILLANKETLVLSGQLFMTEVYKYNASVLPLDSEYNAIFQ 143          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_HELPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain G27) GN=dxr PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.313e-14
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 1
Query:   22 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 489
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VAV + + L+ ++   A      E+  G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIQVFKPKKVAVLDPNDLNNLEPLGA------EVFVGLEGIDAMIEECASNLVLNAIVGVAGLRASFKSLQRNKKLALANKESLVSAG-HLLDIS-----QITPIDSEHFGLWALLQ 144          
BLAST of FC876235 vs. ExPASy Swiss-Prot
Match: DXR_PELUB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelagibacter ubique GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   10 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 486
            K I++ GSTGSIG+  L I+ + +  F++  L    N   L  QVK F  + V V + +      + L N + K  +      + +     + +   +  I G  GLKPT+  I+  K IA+ANKE++I G   +     K+    +P DSEH +I+  +
Sbjct:    2 KKIAIFGSTGSIGSSLLKIIKDDQKNFKIELLTVNKNYKKLIKQVKLFNVKNVIVTDYNSFLITTKLLKNAKVK--VFNNFDSLNKIFNTNNKIDYSMCAISGFDGLKPTLDIIKFTKTIAIANKESIICGWNLIKKDLKKYKTYFVPVDSEHFSIWSLL 159          
The following BLAST results are available for this feature:
BLAST of FC876235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_HELPS3.454e-1534.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMLR3.454e-1537.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELP24.512e-1534.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BLOFL1.005e-1433.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPG1.313e-1433.971-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELUB7.964e-1230.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002B05EF DevOvary1 Citrus clementina cDNA clone C32002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876235 ID=FC876235; Name=FC876235; organism=Citrus clementina; type=EST; length=489bp
GATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAAC
TCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTGG
CACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAGA
TTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAAT
CAAGGAGGCTTTGGCTAATGTTGAAGAAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCCGACACCCAGATGCTGTCACCGTGGTG
ACAGGTATAGTCGGTTGTGCAGGATTAAAGCCTACAGTTGCTGCGATAGA
AGCAGGAAAAGATATAGCTTTGGCCAATAAGGAGACATTGATTGCTGGTG
GTCCTTTTGTCCTTCCTCTAGCTCACAAGCATAACATAAAAATTCTTCCA
GCTGATTCAGAACATTCTGCCATATTTCAGTGTATTCAA
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