FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEON (Malate dehydrogenase OS=Shewanella oneidensis GN=mdh PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_PSYIN (Malate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 55/96 (57.29%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            K+AVLGAAGGIGQ LA+L+K++ P  S+L LYD+   TPGV  D+SH+ T+  V GF G      A+ G D+++I AGV RKPGM R DLFNINAG
Sbjct:    2 KIAVLGAAGGIGQALALLLKLDLPANSILSLYDLAPVTPGVAKDLSHIPTSVKVEGFAGTDPTA-AIEGADVILISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 58/96 (60.42%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V GF G   L +AL   DIV+IPAG+PRKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHESA (Malate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEB9 (Malate dehydrogenase OS=Shewanella baltica (strain OS195) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEB8 (Malate dehydrogenase OS=Shewanella baltica (strain OS185) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEB5 (Malate dehydrogenase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHEB2 (Malate dehydrogenase OS=Shewanella baltica (strain OS223) GN=mdh PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFNINAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSHLSLYDIAPVTPGVAVDLSHIPTAVEIKGFAGEDPTP-ALVGADVVLISAGVARKPGMDRSDLFNINAG 96          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDH_SHEON1.448e-2159.38Malate dehydrogenase OS=Shewanella oneidensis GN=m... [more]
MDH_SHELP1.448e-2160.42Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SHEAM1.448e-2160.42Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDH_PSYIN1.448e-2157.29Malate dehydrogenase OS=Psychromonas ingrahamii (s... [more]
MDH_PSEHT1.448e-2160.42Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_SHESA1.891e-2159.38Malate dehydrogenase OS=Shewanella sp. (strain ANA... [more]
MDH_SHEB91.891e-2159.38Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB81.891e-2159.38Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB51.891e-2159.38Malate dehydrogenase OS=Shewanella baltica (strain... [more]
MDH_SHEB21.891e-2159.38Malate dehydrogenase OS=Shewanella baltica (strain... [more]

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Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
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