FC876238

Overview
NameFC876238
Unique NameFC876238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_ERWCT (Malate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 56/96 (58.33%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++G+ G+   + AL G DIV+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGYSGEDA-KPALAGADIVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_ENT38 (Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGENA-RPALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATS-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHISS (Malate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHIFL (Malate dehydrogenase OS=Shigella flexneri GN=mdh PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHIDS (Malate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHIBS (Malate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_SHIB3 (Malate dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 56/96 (58.33%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAG 96          
BLAST of FC876238 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  208 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAG 489
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL   D+V+I AGV RKPGM R DLFN+NAG
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAG 96          
The following BLAST results are available for this feature:
BLAST of FC876238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
MDH_ERWCT3.226e-2158.33Malate dehydrogenase OS=Erwinia carotovora subsp. ... [more]
MDH_ENT383.226e-2158.33Malate dehydrogenase OS=Enterobacter sp. (strain 6... [more]
MDH_ECOLC3.226e-2158.33Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_SHISS4.213e-2158.33Malate dehydrogenase OS=Shigella sonnei (strain Ss... [more]
MDH_SHIFL4.213e-2158.33Malate dehydrogenase OS=Shigella flexneri GN=mdh P... [more]
MDH_SHIF84.213e-2158.33Malate dehydrogenase OS=Shigella flexneri serotype... [more]
MDH_SHIDS4.213e-2158.33Malate dehydrogenase OS=Shigella dysenteriae serot... [more]
MDH_SHIBS4.213e-2158.33Malate dehydrogenase OS=Shigella boydii serotype 4... [more]
MDH_SHIB34.213e-2158.33Malate dehydrogenase OS=Shigella boydii serotype 1... [more]
MDH_PROMH4.213e-2159.38Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32002B09EF DevOvary1 Citrus clementina cDNA clone C32002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876238 ID=FC876238; Name=FC876238; organism=Citrus clementina; type=EST; length=491bp
GGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCT
CCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCA
TTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGA
GAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCC
CGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTC
TGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTAT
GATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATAC
AAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCC
TCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCT
GGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAAT
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