FC876245
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12 Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 305 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 G +SV+ S + P+R L+ F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 130
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 2 Query: 296 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 A T +++ A R LWFP PP +L G GD GFDP GL +DP T +E+ HCR +ML G +PEL Sbjct: 353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPEL 432
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 305 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 G +SV+ S + P+R ++ F G PP +L G PGD+G+D GL +DPET N + E++H RWAMLGA G PEL Sbjct: 50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 130
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2 Query: 380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535 P +L G PGD+G+D GL +DPET N + E++HCRWAMLGA G PEL Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118 The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bpback to top |