FC876245

Overview
NameFC876245
Unique NameFC876245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:280..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  305 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            G +SV+ S  +    P+R L+   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   50 GKKSVAASIDSPWYGPDRVLYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 130          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 33/80 (41.25%), Postives = 42/80 (52.50%), Query Frame = 2
Query:  296 ATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            A   T     +++ A   R LWFP   PP +L G   GD GFDP GL +DP T      +E+ HCR +ML   G  +PEL
Sbjct:  353 ANITTNLAMFASSGAKEERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPEL 432          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  305 GTRSVSVSAAAA--DPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            G +SV+ S  +    P+R ++   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   50 GRKSVAASIDSPWYGPDRVMYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 130          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB2A_PINSY4.466e-1246.34Chlorophyll a-b binding protein type 2 member 1A, ... [more]
LH18_EUGGR7.618e-1241.25Light-harvesting complex I LH38 proteins (Fragment... [more]
CB2G_SOLLC7.618e-1255.77Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC7.618e-1255.77Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_PYRPY7.618e-1245.12Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB27_TOBAC7.618e-1255.77Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC7.618e-1255.77Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL7.618e-1255.77Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC7.618e-1255.77Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP7.618e-1255.77Chlorophyll a-b binding protein 25, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC32002C07EF DevOvary1 Citrus clementina cDNA clone C32002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bp
GAAGCCAGTTAGAGATCCACTCTTCTATCCTTAAAGATAAGCCCCGGCAT
CCATTAACATTAACAAGTTTTTGTATCTTCTGTTCACTGCCAATTGTATT
CTACTTTACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTG
CCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCA
TCTCATCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAG
GCTTCTTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAAC
AGCGGGAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACA
GGCCCCTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGC
CTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGA
GACGCTGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAA
TGTTAGGAGCTGCAGGAATTTTCATTCCGGAATTGTT
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