FC876245

Overview
NameFC876245
Unique NameFC876245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:280..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  308 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            T+ VS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   38 TKQVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 115          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PEL
Sbjct:   67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  344 PNRPLWF-PGSTP-PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P+RP +  P S   P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+
Sbjct:   52 PDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEI 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  308 TRSVSVSAAAADPNRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            ++SVS  +    P+R  +   F G  PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   30 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 107          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  302 AGTRSVSVSAAAA------DPNRPLWF-PGST-PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            AGT+    + A +       P+R  W  P ST  P +L G  PGD+G+D  GL +DPET +   + E++H RWA+LGA GI  PEL
Sbjct:   22 AGTKQTKAAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPEL 107          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  344 PNRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P+R L+       PP +L G  PGD+G+D  GL +DPET   N + E++H RWAMLGA G   PEL
Sbjct:   52 PDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 117          
BLAST of FC876245 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  380 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 535
            P +L G  PGD+G+D  GL +DPET   N + E++HCRWAMLGA G   PE+
Sbjct:   38 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEI 89          
The following BLAST results are available for this feature:
BLAST of FC876245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
CB23_SOYBN7.618e-1245.57Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_TOBAC7.618e-1255.77Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PETSP7.618e-1255.77Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_TOBAC7.618e-1255.77Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_GOSHI7.618e-1250.00Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_CUCSA7.618e-1245.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO9.950e-1243.02Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB29_MAIZE1.299e-1148.48Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB26_PETSP1.299e-1153.85Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.299e-1153.85Chlorophyll a-b binding protein 5, chloroplastic (... [more]

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Properties
Property NameValue
Genbank descriptionC32002C07EF DevOvary1 Citrus clementina cDNA clone C32002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876245 ID=FC876245; Name=FC876245; organism=Citrus clementina; type=EST; length=537bp
GAAGCCAGTTAGAGATCCACTCTTCTATCCTTAAAGATAAGCCCCGGCAT
CCATTAACATTAACAAGTTTTTGTATCTTCTGTTCACTGCCAATTGTATT
CTACTTTACACGCACACAAACGCCAGTCATAATTTTGCTGAAAGCCTTTG
CCTGGTAGTAAAAATGGCTTCCGTTTGTGCTTCCCCTGCCGTTGCAGCCA
TCTCATCCCCCAGTTCTCAGAAGAGTAGATCAGTTGCGGGAGCAACAAAG
GCTTCTTTCCTTGGTGGGAAGAAGCTGAAATTGAGAAAAAACGGAGCAAC
AGCGGGAACACGATCGGTTTCAGTGAGTGCGGCTGCAGCTGATCCTAACA
GGCCCCTCTGGTTCCCAGGCAGCACTCCTCCTGAATGGCTCGATGGTAGC
CTCCCCGGAGACTTCGGCTTCGATCCTCTTGGTCTTGGATCTGATCCTGA
GACGCTGAGATGGAACGTGCAATCAGAAATTGTGCACTGCAGATGGGCAA
TGTTAGGAGCTGCAGGAATTTTCATTCCGGAATTGTT
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