FC876248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 1.799e-65 Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 HSP 2 Score: 132.494 bits (332), Expect = 1.879e-30 Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643 G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F + A RA+E +N LN + + V + R + GA N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ Q + T N+YVKNL + Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 HSP 3 Score: 112.849 bits (281), Expect = 1.540e-24 Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F ++A +A++ +N LNGK I V + + D R G N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER Q+ TN Y++ ++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65 Identity = 117/192 (60.94%), Postives = 154/192 (80.21%), Query Frame = 2 Query: 74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSE 643 + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++ + K FTNVY+KNL + Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQ 238 HSP 2 Score: 111.694 bits (278), Expect = 3.431e-24 Identity = 65/209 (31.10%), Postives = 117/209 (55.98%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643 G ++++ +L+A + + L+D F G ++S +V +D S GYG+V++ A+ A A++ +N LN K + V + S +D + K+ N++IKNLD+ I + F FG I S ++ D G+S+G+GFV + +SAQ A++++N + +++YVG +K ER+ E+ + SK+ N+YVKNL++ Sbjct: 134 GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65 Identity = 116/195 (59.49%), Postives = 154/195 (78.97%), Query Frame = 2 Query: 74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652 + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++ + K FTN+Y+KN+ T Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT 244 HSP 2 Score: 106.686 bits (265), Expect = 1.104e-22 Identity = 63/209 (30.14%), Postives = 116/209 (55.50%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643 G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A++ +N LN K + V + S +D + K+ NI+IKN+D + + F FG I S ++ D G+S+G+GFV + ESAQ A+++++ + +++YVG +K ER+ E+ + SK+ N+YVKNL++ Sbjct: 137 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 344
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65 Identity = 123/194 (63.40%), Postives = 157/194 (80.93%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS--KFTNVYVKNLSESTT 652 +SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKVA D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + FTNVYVKNL + T Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEIT 237 HSP 2 Score: 119.398 bits (298), Expect = 1.646e-26 Identity = 70/210 (33.33%), Postives = 118/210 (56.19%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ-------SKF-----TNVYVKNLSES 646 G ++++ +L+A++ + LY+ F+ G ++S +V D+ RS GYG+V F + A A++ LN LN K + V + R +S +G N+++KNL K I L TF +G+I S V D +G S+ +GFV F + E+A A+EK+NG+ L + +YVG +K +R+ E+ + S+F +N+Y+KNL +S Sbjct: 130 GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDS 338 HSP 3 Score: 109.383 bits (272), Expect = 1.703e-23 Identity = 67/198 (33.84%), Postives = 107/198 (54.04%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSLR------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNV 622 T++YV +L +TD +L F + G + S V +D S S +G+VNF + + AA A+E +N L + V S R+ LR K N+++KNLD +++ + L + FS +GN+ SCKV + G S+G+GFV + N E A A++++NG ++ K +YV RK+ER + QS FT + Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL-QSLFTQI 420
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.349e-65 Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGE 200 HSP 2 Score: 130.954 bits (328), Expect = 5.466e-30 Identity = 77/209 (36.84%), Postives = 118/209 (56.46%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----MYSHRDPSL--RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643 G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F + A RA+E +N LN + + V R+ L R N++IKN + +D + L + F FG LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ Q + T N+YVKNL + Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 HSP 3 Score: 111.309 bits (277), Expect = 4.482e-24 Identity = 70/205 (34.15%), Postives = 113/205 (55.12%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T++Y+ + ++ D +L +LF + G +SV+V D S + S G+G+V+F ++A +A++ +N LNGK I V + + D R G N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER Q+ TN Y++ ++ Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.068e-65 Identity = 117/190 (61.58%), Postives = 153/190 (80.53%), Query Frame = 2 Query: 74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNL 637 + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++ + K FTNVY+KNL Sbjct: 53 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNL 242 HSP 2 Score: 115.161 bits (287), Expect = 3.104e-25 Identity = 68/209 (32.54%), Postives = 116/209 (55.50%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQ----------SKF--TNVYVKNLSE 643 G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A++ +N LN K + V + S +D + K+ N++IKNLD ID F FG I S ++ D G+S+G+GFV F ESAQ A+E++N + +++YVG +K ER+ E+ + SK+ N+YVKNL++ Sbjct: 140 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.068e-65 Identity = 120/190 (63.16%), Postives = 152/190 (80.00%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643 SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGE 200 HSP 2 Score: 118.627 bits (296), Expect = 2.807e-26 Identity = 68/210 (32.38%), Postives = 116/210 (55.24%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE------------IXQSKFTNVYVKNLSES 646 G ++++ +L+ ++ + LYD F+ G ++S +V D S GY +V+F + A +A+E +N LN + + V + R + GA N++IKN + +D ++L + FS FG LS KV D NG+SKG+GFV ++ E A KA+E++NG ++ K ++VG +K ER E I + + N+Y+KNL ++ Sbjct: 97 GVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDT 304 HSP 3 Score: 111.309 bits (277), Expect = 4.482e-24 Identity = 67/204 (32.84%), Postives = 113/204 (55.39%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI----------------RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T++Y+ + V D L +LF+Q G+ +SV+V RD +S G+G+V++ ++A +A+E +N ++GK I R + + + N++IKNLD ID + L FS FG+I S KV + +G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER ++ TN Y++ ++ Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER-----KAHLTNQYMQRVA 387
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.007e-65 Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 HSP 2 Score: 121.709 bits (304), Expect = 3.316e-27 Identity = 72/209 (34.45%), Postives = 117/209 (55.98%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643 G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F + A RA++ +N LN + + V + R + GA N++IKN + +D + L + F +G LS KV TD +G+S+G+GFV F+ E AQKA++ +NG LN K ++VG +K ER TE+ Q + T N+YVKNL + Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 HSP 3 Score: 107.457 bits (267), Expect = 6.471e-23 Identity = 68/205 (33.17%), Postives = 112/205 (54.63%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T++Y+ + ++ D +L + F Q G +SV+V D +S G+G+V+F ++A +A++ +N LNGK I V + + D R G N+++KNLD ID + L F+ FG+I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER Q+ TN Y++ ++ Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 5.233e-65 Identity = 114/195 (58.46%), Postives = 157/195 (80.51%), Query Frame = 2 Query: 74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK--FTNVYVKNLSESTT 652 + SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +ALE LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCKVA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K FTN+YVKN++ T Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVT 254 HSP 2 Score: 100.523 bits (249), Expect = 7.911e-21 Identity = 71/240 (29.58%), Postives = 109/240 (45.42%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI---RVMYSH-RDPSLRKSGAG------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-----------------------------------------------LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS 607 T++YV ++ VTD + LF + G V S + RD T +S G+G+VNF++ ++A++A++ LN +G+ + R H R+ LRKS N++IKNLD +D + L FS FG I S KV D G+SKG+GFV F N + A KA+ ++N ++N+K +YV RK R ++ QS Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQS 481 HSP 3 Score: 99.3673 bits (246), Expect = 1.762e-20 Identity = 59/212 (27.83%), Postives = 110/212 (51.89%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQS------------KFTNVYVKNLSE 643 G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A++ +N LN K + V H P K+ NI++KN++ + F +G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K ER+ E+ +S + N+Y+KNL + Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV--GHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDD 355
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 5.233e-65 Identity = 118/190 (62.11%), Postives = 152/190 (80.00%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--XQSKFTNVYVKNLSE 643 SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF +A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFGNILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E+ +FTNVY+KN E Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGE 200 HSP 2 Score: 132.494 bits (332), Expect = 1.879e-30 Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 2 Query: 71 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV-MYSHRDPSLRKSGAG-----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-------XQSKFT-----NVYVKNLSE 643 G ++++ +L+ ++ + LYD F+ G ++S +V D S GYG+V+F + A RA+E +N LN + + V + R + GA N++IKN + +D + L D F FG LS KV TD +G+SKG+GFV F+ E AQKA++++NG LN KQ+YVG +K ER TE+ Q + T N+YVKNL + Sbjct: 97 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303 HSP 3 Score: 112.849 bits (281), Expect = 1.540e-24 Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR-----------------DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T++Y+ + ++ D +L DLF + G +SV+V D S + S G+G+V+F ++A +A++ +N LNGK I V + + D R G N+++KNLD ID + L FS FG I S KV + G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK+ER Q+ TN Y++ ++ Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-----QAHLTNQYMQRMA 387 The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bpback to top |