FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 52/195 (26.67%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL------------------EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE-RDTE 595
            +L+VG L  +    QL +LF+Q+G V    V  +  ++   G+GYV FS  ++  RAL                  ++ N T   GK        ++P  +K+   +    + I+NL        L   F+ FG +L   +    +G+ +G+GFVQF N   A KA++ +N   +  + V V   + K + +DT+
Sbjct:    5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQ 199          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF-SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML-LNDKQVYVGHFLRKQERDTEIXQSK 610
            SL++GDLE  + ++ +   F  MG+ V+SV++ R+  T    GY +V F++   A + L  +N  PL G    K  ++ Y+        S   ++F+ +L   +D   L++ F   + +    KV  D  G SKGYGFV+F +E   ++A+ +  G + L  K V +   + K  R   +  S+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQ 187          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+LY+  L+   TD  L ++  Q G ++S +   D +T +  GYG+V+F     A  A++      L GK ++   + +    ++    N++I NL        L    S +G ++S ++  D    SKG GF + ++ E  ++ I+  NG
Sbjct:  231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+LY+  L+   TD  L ++  Q G ++S +   D +T +  GYG+V+F     A  A++      L GK ++   + +    ++    N++I NL        L    S +G ++S ++  D    SKG GF + ++ E  ++ I+  NG
Sbjct:  231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+LY+  L+   TD  L ++  Q G ++S +   D +T +  GYG+V+F     A  A++      L GK ++   + +    ++    N++I NL        L    S +G ++S ++  D    SKG GF + ++ E  ++ I+  NG
Sbjct:  231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+LY+  L+   TD  L ++  Q G ++S +   D +T +  GYG+V+F     A  A++      L GK ++   + +    ++    N++I NL        L    S +G ++S ++  D    SKG GF + ++ E  ++ I+  NG
Sbjct:  231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562
            +YVG +   + +  +   F   G + S+ +  D  T +  G+ +V +   + A  ALE +N   L G+ I+V             D    ++ A N I++ ++ + +    +   F AFG I SC +A D   G+ KGYGF++++  +S+Q A+  +N   L  + + VG
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562
            +YVG +   + +  +   F   G + S+ +  D  T +  G+ +V +   + A  ALE +N   L G+ I+V             D    ++ A N I++ ++ + +    +   F AFG I SC +A D   G+ KGYGF++++  +S+Q A+  +N   L  + + VG
Sbjct:  130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562
            +YVG +   + +  +   F   G + S+ +  D  T +  G+ +V +   + A  ALE +N   L G+ I+V             D    ++ A N I++ ++ + +    +   F AFG I SC +A D   G+ KGYGF++++  +S+Q A+  +N   L  + + VG
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562
            +YVG +   + +  +   F   G + S+ +  D  T +  G+ +V +   + A  ALE +N   L G+ I+V             D    ++ A N I++ ++ + +    +   F AFG I SC +A D   G+ KGYGF++++  +S+Q A+  +N   L  + + VG
Sbjct:  131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RBM28_HUMAN5.140e-1226.67RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
TSAP1_HUMAN6.712e-1228.80tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
SHEP_DROYA6.712e-1226.49Protein alan shepard OS=Drosophila yakuba GN=shep ... [more]
SHEP_DROSE6.712e-1226.49Protein alan shepard OS=Drosophila sechellia GN=sh... [more]
SHEP_DROME6.712e-1226.49Protein alan shepard OS=Drosophila melanogaster GN... [more]
SHEP_DROER6.712e-1226.49Protein alan shepard OS=Drosophila erecta GN=shep ... [more]
PUF60_RAT6.712e-1226.47Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB6.712e-1226.47Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE6.712e-1226.47Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN6.712e-1226.47Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
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