FC876248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12 Identity = 52/195 (26.67%), Postives = 89/195 (45.64%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL------------------EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN----IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE-RDTE 595 +L+VG L + QL +LF+Q+G V V + ++ G+GYV FS ++ RAL ++ N T GK ++P +K+ + + I+NL L F+ FG +L + +G+ +G+GFVQF N A KA++ +N + + V V + K + +DT+ Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQ 199
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG----KPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTF-SAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML-LNDKQVYVGHFLRKQERDTEIXQSK 610 SL++GDLE + ++ + F MG+ V+SV++ R+ T GY +V F++ A + L +N PL G K ++ Y+ S ++F+ +L +D L++ F + + KV D G SKGYGFV+F +E ++A+ + G + L K V + + K R + S+ Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQ 187
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+LY+ L+ TD L ++ Q G ++S + D +T + GYG+V+F A A++ L GK ++ + + ++ N++I NL L S +G ++S ++ D SKG GF + ++ E ++ I+ NG Sbjct: 231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+LY+ L+ TD L ++ Q G ++S + D +T + GYG+V+F A A++ L GK ++ + + ++ N++I NL L S +G ++S ++ D SKG GF + ++ E ++ I+ NG Sbjct: 231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+LY+ L+ TD L ++ Q G ++S + D +T + GYG+V+F A A++ L GK ++ + + ++ N++I NL L S +G ++S ++ D SKG GF + ++ E ++ I+ NG Sbjct: 231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+LY+ L+ TD L ++ Q G ++S + D +T + GYG+V+F A A++ L GK ++ + + ++ N++I NL L S +G ++S ++ D SKG GF + ++ E ++ I+ NG Sbjct: 231 TNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVK-----GLQGKGVQAQMAKQ----QEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQIIQMFNG 372
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562 +YVG + + + + F G + S+ + D T + G+ +V + + A ALE +N L G+ I+V D ++ A N I++ ++ + + + F AFG I SC +A D G+ KGYGF++++ +S+Q A+ +N L + + VG Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562 +YVG + + + + F G + S+ + D T + G+ +V + + A ALE +N L G+ I+V D ++ A N I++ ++ + + + F AFG I SC +A D G+ KGYGF++++ +S+Q A+ +N L + + VG Sbjct: 130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 299
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562 +YVG + + + + F G + S+ + D T + G+ +V + + A ALE +N L G+ I+V D ++ A N I++ ++ + + + F AFG I SC +A D G+ KGYGF++++ +S+Q A+ +N L + + VG Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 305
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12 Identity = 45/170 (26.47%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR--------DPSLRKSGAGN-IFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVG 562 +YVG + + + + F G + S+ + D T + G+ +V + + A ALE +N L G+ I+V D ++ A N I++ ++ + + + F AFG I SC +A D G+ KGYGF++++ +S+Q A+ +N L + + VG Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 300 The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bpback to top |