FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 43/165 (26.06%), Postives = 82/165 (49.70%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI----EKLNGMLLNDKQ 550
            L++G L+   TD  L   F + G +V V V +D  T+RS G+G++ +S++     A +      ++G+ +    +     +    AG     +F+  L    D +++ D F  FGNI+   +  D   G+ +G+ FV+FD+ +   K +     +LNG +++ K+
Sbjct:   33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-QKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKK 196          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKPIRVMYSHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 514
            L++G L    TD  L   F Q G +    V RD +T+RS G+G+V ++  +E   A   +N TP  ++G+ +    +      ++ GA      IF+  + +  +   L D F  +G I   ++ TD  +G+ +G+ FV FD+ +S  K +
Sbjct:   16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_RAT (Non-POU domain-containing octamer-binding protein OS=Rattus norvegicus GN=Nono PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L  ++T+ ++  LF + G+   V + +D       G+G++       A  A   L+  PL GK +RV ++    SL         ++NL + + ++ L + FS FG +    V  D  G+  G G V+F  + +A+KA+++
Sbjct:   81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 212          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_PONAB (Non-POU domain-containing octamer-binding protein OS=Pongo abelii GN=NONO PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L  ++T+ ++  LF + G+   V + +D       G+G++       A  A   L+  PL GK +RV ++    SL         ++NL + + ++ L + FS FG +    V  D  G+  G G V+F  + +A+KA+++
Sbjct:   76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 207          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_MOUSE (Non-POU domain-containing octamer-binding protein OS=Mus musculus GN=Nono PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L  ++T+ ++  LF + G+   V + +D       G+G++       A  A   L+  PL GK +RV ++    SL         ++NL + + ++ L + FS FG +    V  D  G+  G G V+F  + +A+KA+++
Sbjct:   78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 209          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_HUMAN (Non-POU domain-containing octamer-binding protein OS=Homo sapiens GN=NONO PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L  ++T+ ++  LF + G+   V + +D       G+G++       A  A   L+  PL GK +RV ++    SL         ++NL + + ++ L + FS FG +    V  D  G+  G G V+F  + +A+KA+++
Sbjct:   76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 207          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 496
            L+VG L    T+ +L D F + G++ S+ V  D  T RS G+ ++ F+N  EA   +   +   +N K +       DP   K+  G IF+  L   I  + +   F  FGNI+  ++  D    Q KG+ F+ FD+E+
Sbjct:   58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT-EAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQ 188          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 49/203 (24.14%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-----SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640
            T S+++ +L  + T+  L D F      V  +V      +      S+G+G+V F   ++A   +  ++ T ++G  I++  SHR  S  +SG         +G I +KNL      K + + F++FG + S +V    +  ++G+ FV+F   + A+ A+++L+G+ L  +++ V  +  +   D E   ++ T    K ++
Sbjct:  662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS--QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL-VMQYAEEDAVDAEEEIARMTKKVRKQVA 861          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SFPQ_MOUSE (Splicing factor, proline- and glutamine-rich OS=Mus musculus GN=Sfpq PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L A++T+ +   LF + G+   V +       +  G+G++   +   A  A   L+ TP+ G+ +RV ++        + A  + ++NL   + ++ L + FS FG I    V  D  G+S G G V+F ++ +A+KA E+
Sbjct:  291 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFA--------THAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 422          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SFPQ_HUMAN (Splicing factor, proline- and glutamine-rich OS=Homo sapiens GN=SFPQ PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520
            L+VG+L A++T+ +   LF + G+   V +       +  G+G++   +   A  A   L+ TP+ G+ +RV ++        + A  + ++NL   + ++ L + FS FG I    V  D  G+S G G V+F ++ +A+KA E+
Sbjct:  299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFA--------THAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ROA1_DROME2.551e-1126.06Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
RA1L2_HUMAN3.331e-1128.48Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
NONO_RAT3.331e-1127.40Non-POU domain-containing octamer-binding protein ... [more]
NONO_PONAB3.331e-1127.40Non-POU domain-containing octamer-binding protein ... [more]
NONO_MOUSE3.331e-1127.40Non-POU domain-containing octamer-binding protein ... [more]
NONO_HUMAN3.331e-1127.40Non-POU domain-containing octamer-binding protein ... [more]
SQD_DROME4.351e-1130.94RNA-binding protein squid OS=Drosophila melanogast... [more]
MRD1_YEAST4.351e-1124.14Multiple RNA-binding domain-containing protein 1 O... [more]
SFPQ_MOUSE5.682e-1128.08Splicing factor, proline- and glutamine-rich OS=Mu... [more]
SFPQ_HUMAN5.682e-1128.08Splicing factor, proline- and glutamine-rich OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
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