FC876248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11 Identity = 43/165 (26.06%), Postives = 82/165 (49.70%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG----NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI----EKLNGMLLNDKQ 550 L++G L+ TD L F + G +V V V +D T+RS G+G++ +S++ A + ++G+ + + + AG +F+ L D +++ D F FGNI+ + D G+ +G+ FV+FD+ + K + +LNG +++ K+ Sbjct: 33 LFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-QKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKK 196
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKPIRVMYSHRDPSLRKSGA----GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 514 L++G L TD L F Q G + V RD +T+RS G+G+V ++ +E A +N TP ++G+ + + ++ GA IF+ + + + L D F +G I ++ TD +G+ +G+ FV FD+ +S K + Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA---MNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_RAT (Non-POU domain-containing octamer-binding protein OS=Rattus norvegicus GN=Nono PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L ++T+ ++ LF + G+ V + +D G+G++ A A L+ PL GK +RV ++ SL ++NL + + ++ L + FS FG + V D G+ G G V+F + +A+KA+++ Sbjct: 81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 212
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_PONAB (Non-POU domain-containing octamer-binding protein OS=Pongo abelii GN=NONO PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L ++T+ ++ LF + G+ V + +D G+G++ A A L+ PL GK +RV ++ SL ++NL + + ++ L + FS FG + V D G+ G G V+F + +A+KA+++ Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 207
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_MOUSE (Non-POU domain-containing octamer-binding protein OS=Mus musculus GN=Nono PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L ++T+ ++ LF + G+ V + +D G+G++ A A L+ PL GK +RV ++ SL ++NL + + ++ L + FS FG + V D G+ G G V+F + +A+KA+++ Sbjct: 78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 209
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NONO_HUMAN (Non-POU domain-containing octamer-binding protein OS=Homo sapiens GN=NONO PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11 Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L ++T+ ++ LF + G+ V + +D G+G++ A A L+ PL GK +RV ++ SL ++NL + + ++ L + FS FG + V D G+ G G V+F + +A+KA+++ Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK------GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT--------VRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDR 207
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11 Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEE 496 L+VG L T+ +L D F + G++ S+ V D T RS G+ ++ F+N EA + + +N K + DP K+ G IF+ L I + + F FGNI+ ++ D Q KG+ F+ FD+E+ Sbjct: 58 LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNT-EAIDKVSAADEHIINSKKV-------DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQ 188
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: MRD1_YEAST (Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces cerevisiae GN=MRD1 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11 Identity = 49/203 (24.14%), Postives = 99/203 (48.77%), Query Frame = 2 Query: 74 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-----SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSKFTNVYVKNLS 640 T S+++ +L + T+ L D F V +V + S+G+G+V F ++A + ++ T ++G I++ SHR S +SG +G I +KNL K + + F++FG + S +V + ++G+ FV+F + A+ A+++L+G+ L +++ V + + D E ++ T K ++ Sbjct: 662 TVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQAS--QSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL-VMQYAEEDAVDAEEEIARMTKKVRKQVA 861
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SFPQ_MOUSE (Splicing factor, proline- and glutamine-rich OS=Mus musculus GN=Sfpq PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11 Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L A++T+ + LF + G+ V + + G+G++ + A A L+ TP+ G+ +RV ++ + A + ++NL + ++ L + FS FG I V D G+S G G V+F ++ +A+KA E+ Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFA--------THAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 422
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SFPQ_HUMAN (Splicing factor, proline- and glutamine-rich OS=Homo sapiens GN=SFPQ PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11 Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 520 L+VG+L A++T+ + LF + G+ V + + G+G++ + A A L+ TP+ G+ +RV ++ + A + ++NL + ++ L + FS FG I V D G+S G G V+F ++ +A+KA E+ Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFA--------THAAALSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430 The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bpback to top |