FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11648 contig Ccv1_Contig11648:356..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.669e-19
Identity = 61/185 (32.97%), Postives = 90/185 (48.65%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP------------SLRKSGAG-------------NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            L+VG+L  NV  +QL  LF   G V  V V  D  T RS G+G+V  S+  E   A +  N   L+G+P+RV      P            S   SG+G              +++ NL   +D  AL   FS  G ++  +V  D  +G+SKG+GFV +D+ +  Q AI+ L+G  L+ +Q+ V
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 49/154 (31.82%), Postives = 86/154 (55.84%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F++  ++ RA+++LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G+I+   +  D L G+ +G  FV+++  E AQ+AI  LN ++
Sbjct:  127 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 278          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 49/154 (31.82%), Postives = 86/154 (55.84%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F++  ++ RA+++LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G+I+   +  D L G+ +G  FV+++  E AQ+AI  LN ++
Sbjct:  125 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 276          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 50/154 (32.47%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V+F++  +A  A++ LN   +  K ++V Y+   P        N+++ NL + I    L   F  +GNI+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:   85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVI 236          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 49/154 (31.82%), Postives = 84/154 (54.55%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++ D +LY LF  +G + + R+ RD  T  S GYG+V+F +  +A RA+  LN   +  K I+V ++   P   +    N+++ NL ++I  + L   F  +G I+   +  D + G  +G  F++F+  E AQ+AI  LN ++
Sbjct:   78 TNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFAR--PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVI 229          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS-----LRKSG------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT-DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 553
            +++VG L  ++ D  L   F  +G V+  RV  +  T RS GYGYV+F N   A +A++ +    ++G+PI    S   P+      +K G      +  +F+ NL    D  A+ + F+  G ++S ++ T     Q KG+G+VQF N E A+KA++ L G  ++++ V
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV_DROVI (Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-------------RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNG 529
            T+L V  L   +T+ ++  LF+ +G++ SV++ RD S               +SLGYG+VN+   Q+A +A+ +LN   L  K I+V ++   PS       N+++  L K +  + L   F+ FG I++ ++  +     Q+KG GF++FD  E A +AI  LNG
Sbjct:  185 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 348          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-------------RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNG--QSKGYGFVQFDNEESAQKAIEKLNG 529
            T+L V  L   +T+ ++  LF+ +G++ SV++ RD S               +SLGYG+VN+   Q+A +A+ +LN   L  K I+V ++   PS       N+++  L K +  + L   F+ FG I++ ++  +     Q+KG GF++FD  E A +AI  LNG
Sbjct:  149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V+F++  +A  A++ +N   +  K ++V Y+   P        N+++ NL + I    L   F  +GNI+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:  102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNVI 253          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 50/154 (32.47%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGML 535
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V+F+   ++ RA++ LN   +  K ++V Y+   P        N+++ NL + I    L   F  +G I+   +  D L G+ +G  FV+F+  E AQ+AI  LN ++
Sbjct:  110 TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNVI 261          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ROC1_ARATH5.669e-1932.97Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
SXL_DROSU4.799e-1831.82Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
SXL_DROME4.799e-1831.82Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
SXL_CHRRU8.186e-1832.47Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SXL_MEGSC1.396e-1731.82Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
NSR1_YEAST1.824e-1731.18Nuclear localization sequence-binding protein OS=S... [more]
ELAV_DROVI1.824e-1731.93Protein elav OS=Drosophila virilis GN=elav PE=3 SV... [more]
ELAV_DROME1.824e-1731.93Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
SXL_MUSDO2.382e-1731.82Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CERCA2.382e-1732.47Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]

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Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
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