FC876248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16 Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16 Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 2 Query: 77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 529 T+L V L N+T + LF +G++ S ++ RD T +SLGYG+VN+ + ++A +A+ LN L K I+V Y+ PS N+++ L K + K L FS +G I++ ++ D + G S+G GF++FD A++AI+ LNG Sbjct: 51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16 Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------GAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559 ++VG+L + + L +LF + G V V V D T RS G+G+V S+ +E A + N L+G+ +RV S P R++ G G+ +++ NL +D AL FS G ++ KV D +G+S+G+GFV + + E AIE L+G+ LN + + V Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV-NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16 Identity = 61/202 (30.20%), Postives = 105/202 (51.98%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK-------QERDTEIXQSKFTNVYVKNLSESTT 652 +LYVG+L +VT+ + LF+Q+G S ++ + ++ Y +V F ++AA AL +N + GK ++V ++ PS +K N +F+ +L I + + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI + G L +Q+ RK QE +T+ Q +F +V ++ ++ T Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK--QLRFEDVVNQSSPKNCT 206 HSP 2 Score: 80.1073 bits (196), Expect = 1.106e-14 Identity = 49/169 (28.99%), Postives = 78/169 (46.15%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN--------------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 ++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A+ + L G+ IR ++ R P KS N ++ + + + + TFS FG I+ +V + KGY FV+F ESA AI +NG Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 262
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16 Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------MYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559 ++VG+L + + L +LF + G V V V D T RS G+G+V S+ +E A + N L+G+ +RV S R+ S + G + +++ NL +D AL FS G ++ KV D +G+S+G+GFV + + E AIE L+G+ LN + + V Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15 Identity = 51/166 (30.72%), Postives = 87/166 (52.41%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559 L+VG+L +V +L +F+ G V V + T RS G+G+V S +EA +A+E+LN ++G+ + V + S ++ G+ +++ NL +D L FS G ++S +V +D G+S+G+GFV +E AI L+G L+ + V V Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15 Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 577 +LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL +N + GK ++V ++ S +K + + +F+ +L I + + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 81.6481 bits (200), Expect = 3.803e-15 Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 ++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A++ + L G+ IR ++ R P KS ++ + + + + TFS FG I+ +V D KGY FV+F + ESA AI +NG Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNG 271
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15 Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 577 +LYVG+L +VT++ + LF+Q+G + ++ D T + Y +V F + AA AL +N + GK ++V ++ S +K + + +F+ +L I + + F+ FG I +V D+ G+SKGYGFV F N+ A+ AI+++ G L +Q+ RK Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185 HSP 2 Score: 82.0333 bits (201), Expect = 2.912e-15 Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529 ++VGDL +T + F G++ RV +D++T +S GYG+V+F N +A A++ + L G+ IR ++ R P KS ++ + + + + TFS FG I+ +V D KGY FV+F++ ESA AI +NG Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNG 271
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15 Identity = 57/184 (30.98%), Postives = 91/184 (49.46%), Query Frame = 2 Query: 80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS--------LRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 598 +++ L A + L D F+ +G+V VR+ D ++RRS G YV F Q A+ + L G PI V S + + L+K G +++ +L I L F FG I + + D + G+SKGYGF+ F + E A++A+E+LNG L + + VGH + + T+I Sbjct: 167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG-QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDI 349
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15 Identity = 43/177 (24.29%), Postives = 90/177 (50.85%), Query Frame = 2 Query: 83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK 610 LYVG+L+ +T+ L F G + ++++ D +++ Y +V + + +A AL+ LN + +++ ++ + N+F+ +L+ +D + L + F F + LS V D+ G S+GYGFV F +++ AQ A++ + G LN + + + ++ + Q + Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQR 252 The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bpback to top |