FC876248

Overview
NameFC876248
Unique NameFC876248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11648 contig Ccv1_Contig11648:356..1009. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 2
Query:   77 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR-----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VN+ + ++A +A+  LN   L  K I+V Y+   PS       N+++  L K +  K L   FS +G I++ ++  D + G S+G GF++FD    A++AI+ LNG
Sbjct:   51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 229          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.016e-16
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------GAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            ++VG+L  +   + L +LF + G V  V V  D  T RS G+G+V  S+ +E   A +  N   L+G+ +RV  S   P  R++        G G+      +++ NL   +D  AL   FS  G ++  KV  D  +G+S+G+GFV + + E    AIE L+G+ LN + + V
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV-NSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 61/202 (30.20%), Postives = 105/202 (51.98%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN---IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK-------QERDTEIXQSKFTNVYVKNLSESTT 652
            +LYVG+L  +VT+  +  LF+Q+G   S ++  + ++     Y +V F   ++AA AL  +N   + GK ++V ++   PS +K    N   +F+ +L   I  + +   F+ FG I   +V  D+  G+SKGYGFV F N+  A+ AI  + G  L  +Q+      RK       QE +T+  Q +F +V  ++  ++ T
Sbjct:   10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK--QLRFEDVVNQSSPKNCT 206          

HSP 2 Score: 80.1073 bits (196), Expect = 1.106e-14
Identity = 49/169 (28.99%), Postives = 78/169 (46.15%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN--------------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            ++VGDL   +T   +   F   G++   RV +D++T +S GYG+V+F N  +A  A+  +    L G+ IR  ++ R P   KS   N                    ++   +   +  + +  TFS FG I+  +V  +     KGY FV+F   ESA  AI  +NG
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNG 262          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 55/179 (30.73%), Postives = 89/179 (49.72%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV----------MYSHRDPSLRKSG---------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            ++VG+L  +   + L +LF + G V  V V  D  T RS G+G+V  S+ +E   A +  N   L+G+ +RV            S R+ S  + G         +  +++ NL   +D  AL   FS  G ++  KV  D  +G+S+G+GFV + + E    AIE L+G+ LN + + V
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 51/166 (30.72%), Postives = 87/166 (52.41%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 559
            L+VG+L  +V   +L  +F+  G V    V  +  T RS G+G+V  S  +EA +A+E+LN   ++G+ + V  +    S  ++  G+      +++ NL   +D   L   FS  G ++S +V +D   G+S+G+GFV   +E     AI  L+G  L+ + V V
Sbjct:   57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRV 222          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 577
            +LYVG+L  +VT++ +  LF+Q+G   + ++  D  T  +  Y +V F   + AA AL  +N   + GK ++V ++    S +K  + +             +F+ +L   I  + +   F+ FG I   +V  D+  G+SKGYGFV F N+  A+ AI+++ G  L  +Q+      RK
Sbjct:    8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            ++VGDL   +T   +   F   G++   RV +D++T +S GYG+V+F N  +A  A++ +    L G+ IR  ++ R P   KS                        ++   +   +  + +  TFS FG I+  +V  D     KGY FV+F + ESA  AI  +NG
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNG 271          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGN-------------IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 577
            +LYVG+L  +VT++ +  LF+Q+G   + ++  D  T  +  Y +V F   + AA AL  +N   + GK ++V ++    S +K  + +             +F+ +L   I  + +   F+ FG I   +V  D+  G+SKGYGFV F N+  A+ AI+++ G  L  +Q+      RK
Sbjct:    8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185          

HSP 2 Score: 82.0333 bits (201), Expect = 2.912e-15
Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKS--------------------GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 529
            ++VGDL   +T   +   F   G++   RV +D++T +S GYG+V+F N  +A  A++ +    L G+ IR  ++ R P   KS                        ++   +   +  + +  TFS FG I+  +V  D     KGY FV+F++ ESA  AI  +NG
Sbjct:  108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNG 271          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 57/184 (30.98%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   80 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPS--------LRKSGAG--NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 598
            +++   L A +    L D F+ +G+V  VR+  D ++RRS G  YV F   Q    A+ +     L G PI V  S  + +        L+K   G   +++ +L   I    L   F  FG I +  +  D + G+SKGYGF+ F + E A++A+E+LNG  L  + + VGH   + +  T+I
Sbjct:  167 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG-QRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDI 349          
BLAST of FC876248 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 43/177 (24.29%), Postives = 90/177 (50.85%), Query Frame = 2
Query:   83 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIXQSK 610
            LYVG+L+  +T+  L   F   G + ++++  D    +++ Y +V +  + +A  AL+ LN   +    +++ ++ +          N+F+ +L+  +D + L + F  F + LS  V  D+  G S+GYGFV F +++ AQ A++ + G  LN + + +    ++   +    Q +
Sbjct:   77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQR 252          
The following BLAST results are available for this feature:
BLAST of FC876248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
ELAV4_XENTR1.544e-1629.83ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.544e-1629.83ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
ROC1_NICSY2.016e-1632.1829 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
TIAR_HUMAN4.492e-1630.20Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
ROC1_NICPL7.662e-1630.7330 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL1.001e-1530.7228 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
TIA1_MOUSE1.707e-1529.44Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN1.707e-1529.44Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
RBM23_HUMAN1.707e-1530.98Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
PUB1_YEAST1.707e-1524.29Nuclear and cytoplasmic polyadenylated RNA-binding... [more]

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Properties
Property NameValue
Genbank descriptionC32002D03EF DevOvary1 Citrus clementina cDNA clone C32002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876248 ID=FC876248; Name=FC876248; organism=Citrus clementina; type=EST; length=654bp
ATTTGAGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTG
GGGCCAATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTG
GAGGCGAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGG
TCAAGTGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGATCTC
TCGGTTACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCAAGGGCA
TTGGAGATGCTGAACTTCACACCTCTGAATGGAAAGCCCATTAGGGTTAT
GTATTCTCATCGTGACCCAAGTCTTCGCAAAAGTGGCGCAGGGAATATTT
TCATTAAGAACCTAGATAAGGCCATTGATCACAAAGCTTTGCACGATACC
TTTTCTGCTTTTGGGAACATTCTCTCTTGCAAGGTTGCTACAGACCTCAA
TGGTCAGTCAAAGGGCTATGGATTTGTACAATTTGACAATGAGGAGTCTG
CCCAAAAAGCTATTGAGAAGTTGAACGGTATGTTATTGAATGACAAGCAA
GTTTATGTTGGACATTTCCTCCGCAAGCAGGAGAGAGATACTGAGATCAA
NCAGAGCAAATTCACCAATGTTTATGTGAAGAACCTCTCAGAGTCAACAA
CTGA
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