FC876275

Overview
NameFC876275
Unique NameFC876275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C71C2_MAIZE (Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEE----MAELTRALASAGTEPVNLAQQMNLCVANALGRVMLG 616
            PPG  P  I+G+L  +G   H SI  L   HG   L+ LR+G                L+  D  F++RPP   A+ I Y   D+ F PYG   R  RK+ + H+ S K +  +RH RQEE    M ++  A  +A    V+L+  ++    + + R +LG
Sbjct:   62 PPGKLP--IIGHLHLIGAETHISIRDLDAKHGRNGLLLLRIGAVPTLFVSSPSAADAVLRTQDHIFASRPPWMAAEIIRYGPSDVAFVPYGEYGRQGRKLLTTHMLSTKKVQSFRHGRQEEVRLVMDKIRAAATAAPPAAVDLSDLLSGYTNDVVSRAVLG 220          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C82A2_SOYBN (Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 50/160 (31.25%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  170 WPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVR----QEEMAELTRALAS-----AGTEPVNLAQQMNLCVANALGRVMLG 616
            WPI+G+LP L     PH+++  LA  +GP+  +++G              +    +D   S+ P    A  + YN   IV  PYGP WR LRKI  +   S   ++   HVR    Q  + EL R   S     +G   V L Q  +L V N + R++ G
Sbjct:   44 WPIIGHLPLLLGSKTPHKTLGDLADKYGPIFSIKIGAKNAVVVSNWEMAKECYTTNDIAVSSLPDLISANLLCYNRSMIVVAPYGPYWRQLRKILMSEFLSPSRVEQLHHVRVSEVQSSITELFRDWRSNKNVQSGFATVELKQWFSLLVFNMILRMVCG 203          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C81F1_ARATH (Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 40/129 (31.01%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQ-FLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRALA 535
            PPGP   P VG+L  + P  H+ +   +  +GP+  LR G              + F   +D   S+RP    AK++AYN+  +   PYG  WR LR+I S  + S   L +++H+R++E+  +   L+
Sbjct:   29 PPGPPSRPFVGHLHLMKPPIHRLLQRYSNQYGPIFSLRFGSRRVVVITSPSLAQESFTGQNDIVLSSRPLQLTAKYVAYNHTTVGTAPYGDHWRNLRRICSQEILSSHRLINFQHIRKDEILRMLTRLS 157          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 44/157 (28.03%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRAL---ASAGTEPVNLAQQMNLCVANALGRVM 610
            PPGP P P+ GN   +G  + H+++  LA+  G ++ LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +   F+ K +  YR+  +EE A++   +     A T  + L +++ L + N + R+M
Sbjct:   34 PPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPGAATHGIVLRRRLQLMMYNNMYRIM 190          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRP-PNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQE 505
            PPGP   PI GN+  LG  P++ +A L + +GP+++L+LG              +  K HD +F+NR  P+    H +Y    +   PYGP WR  R+I +  +F  K + +   VR++
Sbjct:   36 PPGPPGLPIFGNMFELGTEPYKKMAVLRQKYGPVLWLKLGSTYTMVVQTAQASEELFKNHDISFANRVIPDVNQAH-SYYQGSLAIAPYGPFWRFQRRICTIEMFVHKKISETEPVRRK 153          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRAL---ASAGTEPVNLAQQMNLCVANALGRVM 610
            PPGP P P+ GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +   F+ K +  YR+  +EE A++   +     A T  + L +++ L + N + R+M
Sbjct:   34 PPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLMMYNNMYRIM 190          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C81E1_GLYEC (Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 40/128 (31.25%), Postives = 60/128 (46.88%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRALA 535
            PPGP   PI+GNL HL    H++  GL+  +G +  L  G              Q    +D   +NRP     K+I YNY  +    YG  WR LR+I++  + S   ++ +  +R++E   L   LA
Sbjct:   33 PPGPPSLPIIGNLHHLKRPLHRTFKGLSEKYGHVFSLWFGSRLVVVVSSASEFQQCFTKNDVVLANRPRFLSGKYIFYNYTTLGSTSYGEHWRNLRRITALDVLSNHRINSFSGIRRDETQRLITRLA 160          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C71C1_MAIZE (Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 45/143 (31.47%), Postives = 63/143 (44.06%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRALASAGTEPVNLAQQM 574
            P  P   PI+G+L  +G  PH S   L   +G   LM +++G                L+ HD   ++RP N  A  I YN  D+ F PYG  WR  RK+ + HL S K +   R  R+EE+  +   +  A       A  M
Sbjct:   57 PTPPGKLPIIGHLHLIGSHPHVSFRDLHAKYGHNGLMLVQVGAVPTIVVSTPQAAEAVLRTHDHVLASRPRNPVADIIRYNSTDVAFAPYGVYWRTARKVVNTHLLSAKMVFSKRREREEEVRLVVARIRDAAEASPGTALDM 199          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: C71A8_MENPI (Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 47/155 (30.32%), Postives = 70/155 (45.16%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAELTRALASAGTEPVNLAQQMNLCVANALGRVMLG 616
            PP P+  PI+GNL  LG +PH ++  +AR HGP+M L LG                   H+++ S      G++  A   Q  V   YG  WR L+ I    L S K +  +R VR+EE   L + +  +    VNL+        + + R  +G
Sbjct:   50 PPSPRKLPILGNLLQLGSLPHHNLRSMARKHGPIMLLHLGSVRPVSSRRRPRGN-----HENSRSRLRRPRGSRSAALQLQGRV-GGYGEYWRQLKTICVVQLLSNKRVQSFRSVREEETELLMKKIGDSSGN-VNLSHMFTQLTNDVVCRSAIG 197          
BLAST of FC876275 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 44/157 (28.03%), Postives = 74/157 (47.13%), Query Frame = 2
Query:  152 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSAHLFSGKALDDYRHVRQEEMAEL---TRALASAGTEPVNLAQQMNLCVANALGRVM 610
            PPGP P PI GN   +G  + H+++  LA+  G ++ LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +   F+ K +  YR+  + E A +    +   +A TE + + +++ L + N + R+M
Sbjct:   34 PPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAATEGIVIRRRLQLMMYNNMFRIM 190          
The following BLAST results are available for this feature:
BLAST of FC876275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
C71C2_MAIZE3.152e-1332.30Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 S... [more]
C82A2_SOYBN5.377e-1331.25Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=... [more]
C81F1_ARATH9.172e-1331.01Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_POPTM1.565e-1228.03Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
C76A2_SOLME1.565e-1232.77Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
TCMO_POPKI2.669e-1228.03Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
C81E1_GLYEC2.669e-1231.25Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata ... [more]
C71C1_MAIZE2.669e-1231.47Cytochrome P450 71C1 OS=Zea mays GN=CYP71C1 PE=2 S... [more]
C71A8_MENPI2.669e-1230.32Cytochrome P450 71A8 OS=Mentha piperita GN=CYP71A8... [more]
TCMO_HELTU7.765e-1228.03Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002G02EF DevOvary1 Citrus clementina cDNA clone C32002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876275 ID=FC876275; Name=FC876275; organism=Citrus clementina; type=EST; length=616bp
GGTACCATTTCTACGCTTTCTCTGGGAAACGAAACAAAGAGCAATGTCTA
CTTTACCACTACTGATACTGTACACATCACTTTTGGCAATTGTCATTTCT
TTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCTCCCACCGTCT
GCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTCCCTCACTTGG
GCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAACCCACGGCCCC
CTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGGCCGCTTCCGC
TTCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAACTTCTCCAACC
GCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTATCAGGACATC
GTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGAAGATCAGCTC
CGCTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGGCACGTTCGCC
AGGAAGAGATGGCGGAGCTCACGCGCGCGTTGGCGAGTGCAGGAACGGAG
CCTGTGAACTTAGCTCAACAGATGAACTTGTGCGTTGCGAATGCCCTAGG
GAGGGTGATGCTAGGC
back to top