FC876288

Overview
NameFC876288
Unique NameFC876288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length122
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS1_SECCE (Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.415e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA+GPATVLAI T  PA+ V QADYPDYYF+ITKS+HM
Sbjct:   13 AQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHM 52          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.415e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA+GPATVLAI T  PA+ V QADYPDYYF+ITKS+HM
Sbjct:   13 AQRAEGPATVLAIGTATPANCVYQADYPDYYFKITKSDHM 52          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHSY_DIACA (Chalcone synthase OS=Dianthus caryophyllus GN=CHS PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.531e-11
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 3
Query:    9 RADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            RADGPAT+LAI T  P +++ QADYPDYYFR+TKSEHM
Sbjct:   12 RADGPATILAIGTATPPNAIYQADYPDYYFRVTKSEHM 49          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.531e-11
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEHM 122
            +QRA GPATVLAI T  P++ + QADYPDYYFRITKS+HM
Sbjct:   10 AQRAHGPATVLAIGTATPSNCITQADYPDYYFRITKSDHM 49          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.836e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEH 119
            +QRA+GPAT+LAI TV PA+ VNQ+ YPDYYFRIT SEH
Sbjct:   10 AQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEH 48          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.836e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEH 119
            +QRA+GPAT+LAI TV PA+ VNQ+ YPDYYFRIT SEH
Sbjct:   10 AQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEH 48          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.836e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEH 119
            +QRA+GPAT+LAI TV PA+ VNQ+ YPDYYFRIT SEH
Sbjct:   10 AQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEH 48          
BLAST of FC876288 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.836e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 3
Query:    3 SQRADGPATVLAIRTVAPAHSVNQADYPDYYFRITKSEH 119
            +QRA+GPAT+LAI TV PA+ VNQ+ YPDYYFRIT SEH
Sbjct:   10 AQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEH 48          
The following BLAST results are available for this feature:
BLAST of FC876288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CHS1_SECCE4.415e-1175.00Chalcone synthase 1 OS=Secale cereale GN=CHS1 PE=3... [more]
CHS1_HORVU4.415e-1175.00Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHSY_DIACA7.531e-1173.68Chalcone synthase OS=Dianthus caryophyllus GN=CHS ... [more]
CHSY_BETVE7.531e-1172.50Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS8_IPOBA9.836e-1174.36Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS4_IPOBA9.836e-1174.36Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS2_IPOBA9.836e-1174.36Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_IPOBA9.836e-1174.36Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]

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Properties
Property NameValue
Genbank descriptionC32002H12EF DevOvary1 Citrus clementina cDNA clone C32002H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876288 ID=FC876288; Name=FC876288; organism=Citrus clementina; type=EST; length=122bp
ATTCTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCCGTACGGTC
GCGCCTGCCCACAGTGTCAACCAGGCTGATTATCCCGACTATTACTTCAG
GATCACAAAGAGCGAGCATATG
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