FC876289

Overview
NameFC876289
Unique NameFC876289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_YEAST (Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SEH1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 480
            Q  ++GH+D VHDV  D+YG+ +AT SSD  IK+  +  +TS      S   H  ++  + WA P++G I+AS S+D TV +W+E    E      W K     D K S+ S+ +AP  LGL LAC  +DG + ++ A
Sbjct:    2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_SCHPO (Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-16
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG--AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG 492
            I+T H+D V+DV  D+YG+R+ + S+D  +K+    ++T           G  ++  VAWAHP FG +LA CS D  V I++E   N     W++     D +S+V  I + P + G  LA  S+D  + ++ A   G
Sbjct:    9 IQTNHQDLVNDVTYDFYGRRMVSCSADQRVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAVLDISFCPFQHGCKLAAVSADATLRIYEAMEPG 146          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-RADGGWDTSRIDQAHPVGVTSVSW 552
            +  GH  T+ DVA    G+ LA+AS D ++ I    +   +  A L GH+  V  V+W+  K GS+LA+CS D +V +W+    +E+    V   H   V  ++W PHE    LA  S D  I ++    AD  W +     +H   V S+S+
Sbjct:   55 LSDGHSRTIRDVAWSPCGQYLASASFDATVAIWDKKSGEFECNATLEGHENEVKSVSWS--KSGSLLATCSRDKSVWVWEVAQEDEYECAAVLNTHTQDVKKVEWHPHE--DILASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISF 203          

HSP 2 Score: 70.0922 bits (170), Expect = 1.173e-11
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            L+GH+G  W   W HPK G++LA+C  D T+ IW E  S  W+   V  D H  ++  + W+P   G  LA  S D  ++++  ++ G ++ +   + H   V SVSW+ S
Sbjct:   10 LTGHRGRAWGAGW-HPK-GNVLATCGEDKTIRIWAEDASQRWVAKTVLSDGHSRTIRDVAWSP--CGQYLASASFDATVAIWDKKS-GEFECNATLEGHENEVKSVSWSKS 115          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_CULQU (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Culex quinquefasciatus GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 50/161 (31.06%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   82 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-RADGGWDTSRIDQAHPVGVTSVSWAPS 561
            +P   +  GH  T+ DVA    G+ LA+AS D ++ I    +   +  A L GH+  V  V+W+  K G++LA+CS D +V IW+    +E+    V   H   V  ++W P+E    LA  S D  I ++    AD  W +     +H   V S+++  S
Sbjct:   50 VPKTVLSDGHTRTIRDVAWSPCGRFLASASFDATVAIWDRRSGEFECNATLEGHENEVKSVSWS--KSGALLATCSRDKSVWIWEVAQEDEYECAAVLNTHSQDVKKVEWHPNE--DVLASASYDNTIQLYREDLADSDWSSFDTLASHDSTVWSIAFDAS 206          

HSP 2 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTA 567
            LSGH+G VW   W HP+   +LA+C  D T+ IW +  +  W+   V  D H  ++  + W+P   G  LA  S D  ++++  R+ G ++ +   + H   V SVSW+ S A
Sbjct:   10 LSGHRGRVWGAGW-HPR-DPVLATCGEDKTIRIWADDGTGRWVPKTVLSDGHTRTIRDVAWSP--CGRFLASASFDATVAIWDRRS-GEFECNATLEGHENEVKSVSWSKSGA 117          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROAN (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            L GHKG +W VAW HPK G++ ASC  D  + IW   N N W    +  D HK ++  I W+P   G  LA  S DG  +++ +++ G ++ +   + H   V SVSW+ S
Sbjct:   10 LQGHKGRIWGVAW-HPK-GNVFASCGEDKAIRIWSL-NGNTWTTKTILSDGHKRTIREIRWSP--CGQYLASASFDGTTAIW-SKSSGEFECNATLEGHENEVKSVSWSRS 114          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 51/155 (32.90%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            ++ GH+ TV  VA    G  LA+AS D +  I    N+  + L  L GH+  V  VAWA    G++LA+CS D +V IW+    NE+    V   H   V  + W P +    LA  S D N+ V+    D  W+     + H   V  +++ PS
Sbjct:   56 LQDGHQRTVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNLLATCSRDKSVWIWEVDEENEYECVSVVNSHTQDVKHVVWHPTQ--ELLASCSYDNNVCVY-KEEDDDWECRATLEGHTSTVWGLTFDPS 205          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 46/153 (30.07%), Postives = 71/153 (46.41%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSW 552
            +  GH+ T+ ++     G+ LA+AS D +  I    +   +  A L GH+  V  V+W+  K G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I +F   A D  WD +    +H   V S+ +
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDF 202          

HSP 2 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 45/153 (29.41%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            GH+  +  VA    G   A+   D +I+I  + GN+ S       GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+  + G  LA  S D ++ ++    D  ++ + +   H   V  V W P+
Sbjct:   12 GHKGRIWGVAWHPKGNTFASCGEDKAIRIWSLSGNSWSTKTILSDGHKRTIREIRWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPT 159          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPS (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            GH+  +  VA    G   A+   D +I++  +  NT      LS GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+    G  LA  S D ++ ++    D  ++ + +  AH   V  V W P+
Sbjct:   12 GHKGRIWGVAWHPKGNVFASCGEDKAIRVWSLSGNTWSTKTILSDGHKRTIREIRWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPT 159          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            GH+  +  VA    G   A+   D +I++  +  NT      LS GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+    G  LA  S D ++ ++    D  ++ + +  AH   V  V W P+
Sbjct:   12 GHKGRIWGVAWHPKGNVFASCGEDKAIRVWSLSGNTWSTKTILSDGHKRTIREIRWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPT 159          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROGR (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila grimshawi GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 48/153 (31.37%), Postives = 70/153 (45.75%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            GH+  +  VA    G   A+   D +I+I     NT      LS GHK  + EV W+    G  LAS SFD T  IW +   N  +     E H++ V S+ W+  + G  LA  S D ++ ++    D  ++ + +  AH   V  V W PS
Sbjct:   12 GHKGRIWGVAWHPKGNSFASCGEDKAIRIWSQSGNTWTTKTILSDGHKRTIREVRWS--PCGEYLASASFDATTAIWSKHECNATL-----EGHENEVKSVSWS--QSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPS 155          
The following BLAST results are available for this feature:
BLAST of FC876289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SEH1_YEAST1.805e-2038.41Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SE... [more]
SEH1_SCHPO1.211e-1633.33Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=s... [more]
CIAO1_AEDAE9.594e-1432.68Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CULQU6.219e-1331.06Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROAN5.264e-1237.84Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1B_SALSA6.875e-1232.90Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROWI3.412e-1130.07Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPS3.412e-1130.07Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPE3.412e-1130.07Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROGR4.457e-1131.37Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC32003A01EF DevOvary1 Citrus clementina cDNA clone C32003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876289 ID=FC876289; Name=FC876289; organism=Citrus clementina; type=EST; length=665bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACGTGAAGGTGTGGA
GCTGTACATGGATTT
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