FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNPX (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain WH8102) GN=carA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.900e-23 Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFE 366 SYAGQ V T P +GNTGVN DD+E+ G++ R L+ SNWRC+E+L N++ ++GI VDTRA+ RRLR G++ GV+S++ L E+ + + G++L S VS EP+E Sbjct: 51 SYAGQLVTFTYPELGNTGVNGDDQEADHPHARGVIARQLAPCASNWRCSESLDNWMERHGLVGICGVDTRALVRRLRDGGAINGVISSDGRSPADLLAEVRHAPSMEGLNLASQVSTTEPYE 172
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_TERTT (Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SYA Q V +T PHIGNTG N +DEE + + GLVIR L + SN+R +++L YL+ +NI+GI+D+DTR +TR LR G+L G + + + E LE +R + + G+DL +VS ++ ++ + + ++G Sbjct: 55 SYARQIVTLTYPHIGNTGTNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRDKGALAGCIMAGD-VDEAEALETARGFAGLQGMDLAKEVSTKDTYQWRDGSWKLG 185
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNY3 (Carbamoyl-phosphate synthase small chain OS=Synechocystis sp. (strain PCC 6803) GN=carA PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 3.206e-22 Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381 SY GQ V T P +GNTGVN +DEES + G+V R+++ SNWR ++L +YL E I+GI +DTRA+TR+LR G++ G +STE + + L + + + G++L+ +V+ E +E +ST Sbjct: 51 SYCGQIVTFTYPELGNTGVNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRSIGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHEVYEWTDST 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HALER (Carbamoyl-phosphate synthase small chain OS=Halomonas eurihalina GN=carA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.468e-22 Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL----STEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY+ Q V +T PHIGNTGVN +D ES AGLVIR L + S++RC +++ +YLA++N++GI+D+ TR +TR LR GS G + E ++ LE +R++ + G+DL VS EP+E E +G Sbjct: 47 SYSRQIVTLTYPHIGNTGVNSEDVESSSIAAAGLVIRDLPLLASSFRCEQSMSDYLAQQNVLGIADMHTRRLTRLLRDKGSQNGAILAGPDAEGEDAEARALEAARAFPGLKGMDLAKVVSCAEPYEWSEGEWTLG 182
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIGO (Carbamoyl-phosphate synthase small chain OS=Neisseria gonorrhoeae GN=carA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.046e-21 Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E +E E ++G Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNETVAIADIDTRRLTMLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWELG 178
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THISH (Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=carA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.896e-21 Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIGI*H 402 SYA Q V +T PHIGNTGVN +DEES AGLVIR L S+WR E+L +YL ++ I+++DTR +TR LR+ G+ G + E +Q L +R + + G+DL +VS E ++ E T Q+G H Sbjct: 48 SYARQIVTLTYPHIGNTGVNPEDEESAGVHAAGLVIRDLPPLVSSWRSRESLPDYLTRFGVVAIANIDTRRLTRILREKGAQNGCIMAGEI-DEQAALAAARGFPGLKGMDLAKEVSTAEIYDWTEGTWQLGSGH 181
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNP6 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQ 387 SY GQ V T P +GNTGVN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GI +DTRA+T+ LR G++ G +ST ++ E+ + + G++L+ V+ P+E T Q Sbjct: 61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQ 189
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNE7 (Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus (strain PCC 7942) GN=carA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQ 387 SY GQ V T P +GNTGVN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GI +DTRA+T+ LR G++ G +ST ++ E+ + + G++L+ V+ P+E T Q Sbjct: 61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRPYEWQTPTSQ 189
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PHOLL (Carbamoyl-phosphate synthase small chain OS=Photorhabdus luminescens subsp. laumondii GN=carA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20 Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN GVN D+ES + GLVIR L + TSN+RC ETL +YL NI+ I+D+DTR +TR LR+ GS G + + Q LE ++++ + G+DL +V+ ++ + ++ + Sbjct: 47 SYSRQIVTLTYPHIGNVGVNSVDKESLKVQAQGLVIRDLPLLTSNFRCEETLSDYLKRHNIVAIADIDTRKLTRLLREKGSQNGCIIAGKQIDAQVALEKAQAFPGLEGMDLAKEVTTKQIYPWLQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIMB (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup B GN=carA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20 Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E +E E +G Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALG 178 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |