FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STAAC (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain COL) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_METJA (Carbamoyl-phosphate synthase small chain OS=Methanocaldococcus jannaschii GN=carA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 48/124 (38.71%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM----SRSWDIVGIDLISDVSGQEP 360
            SY GQ V+MT P  GN GV  D  ES      G V+R ++        ++ L ++L E +I GI D+DTR +TR++R  G +   L   E  SD E+ E+     R  DI  IDL+  VS +EP
Sbjct:   45 SYKGQIVMMTYPLEGNYGVKKDWFESDGIKAEGFVVREVT--------SKALDDFLKEYDIPGIQDIDTRFLTRKIRDKGVVKSCLKVAEEISDDEISELLERVKRYSDISDIDLVPLVSTKEP 160          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ARCFU (Carbamoyl-phosphate synthase small chain OS=Archaeoglobus fulgidus GN=carA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL---IGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQE 357
            SY GQ ++MT P IGN GVN +D ES    + G V++ L    SNWR   ++   L + ++ GI  VDTR +TR++R  GS+   IG+   +  K  ++ +E      I  IDL+  V  +E
Sbjct:   45 SYKGQILMMTYPLIGNYGVNREDFESDGVKVEGFVVKELCKNPSNWRSEMSVDELLKQYDVPGIEGVDTRMLTRKIRIYGSMKAAIGIGDVDREKLVRKAVEQP---FISDIDLVDKVCVKE 163          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRP8 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M18 GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA 147          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRP6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M6 GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA 147          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRP3 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M3 GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA 147          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRP1 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M1 GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA 147          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRMU (Carbamoyl-phosphate synthase small chain OS=Streptococcus mutans GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267
            SY GQ +  T P +GN G+N DD ES +    G+V+   +   +NWR   TL  +L  +NI GIS +DTRA+T+ +R  G++   L+ E
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIKPTCKGVVVSENARRANNWRKQMTLDEFLKSKNIPGISGIDTRALTKIIRHHGTMKATLANE 134          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DEIRA (Carbamoyl-phosphate synthase small chain OS=Deinococcus radiodurans GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 43/134 (32.09%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE----------ESKSDQELLEMSRS---WDIVGIDLISDVSGQEPF 363
            SY GQ V +T PH+GN GV   D ES + ++ G + R  S   SN+R  ++L  ++ +  ++ I  +DTRA+ RRLR  G + GV++            E    +E + + R+    DI G D+  +V+   P+
Sbjct:   49 SYNGQIVTITYPHVGNYGVAIYDMESNKPYVRGFISREFSGEYSNYRAQQSLEAFMQQYGVVSIQGIDTRALVRRLRSGGVVKGVIAHRSFTHPEDPYGEFTPAEEQIYVQRARDHQDIDGFDMTKEVTTALPY 182          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRA5 (Carbamoyl-phosphate synthase small chain OS=Streptococcus agalactiae serotype V GN=carA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ +  T P IGN G+N DD ES +    G+VI   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L  E +   + L  + +S
Sbjct:   45 SYNGQIITFTYPLIGNYGINRDDYESIRPTCKGVVIYEWAEYPSNWRQQMTLDEFLKLKGIPGISGIDTRALTKIIRKHGTMKACLINEGNSIHEALENLQKS 147          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_STAAC1.034e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_METJA1.350e-1238.71Carbamoyl-phosphate synthase small chain OS=Methan... [more]
CARA_ARCFU1.350e-1236.89Carbamoyl-phosphate synthase small chain OS=Archae... [more]
CARA_STRP81.763e-1239.81Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP61.763e-1239.81Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP31.763e-1239.81Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP11.763e-1239.81Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRMU1.763e-1240.45Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_DEIRA1.763e-1232.09Carbamoyl-phosphate synthase small chain OS=Deinoc... [more]
CARA_STRA52.303e-1238.83Carbamoyl-phosphate synthase small chain OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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