FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEPK (Carbamoyl-phosphate synthase small chain OS=Pseudomonas putida (strain KT2440) GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQI 390
            SYA Q V +T PHIGNTG   +D ES + + AGLVIR L +  SNWR  ++L  YL   N++ I+ +DTR +TR LR+ G+  G +   ++ S++  +  +R +  + G+DL   VS +E +E   S  ++
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAESSRVWSAGLVIRDLPLLASNWRNTQSLPEYLKANNVVAIAGIDTRRLTRILREKGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVSTKERYEWRSSVWEL 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEAE (Carbamoyl-phosphate synthase small chain OS=Pseudomonas aeruginosa GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SYA Q V +T PHIGNTG   +D E+ + + AGL+IR L +  SNWR  ++L +YL     + I+ +DTR +TR LR+ GS  G +      +++  LE++R++  + G+DL  +V+  E +E
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAEANRVWAAGLIIRDLPLIASNWRSKQSLPDYLKANGTVAIAGIDTRRLTRILREKGSQNGCILAGADATEERALELARAFPGLKGMDLAKEVTTAERYE 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SALTY (Carbamoyl-phosphate synthase small chain OS=Salmonella typhimurium GN=carA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   +S   +  LE ++++  + G+DL  +V+  E +   + +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SALTI (Carbamoyl-phosphate synthase small chain OS=Salmonella typhi GN=carA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   +S   +  LE ++++  + G+DL  +V+  E +   + +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PASMU (Carbamoyl-phosphate synthase small chain OS=Pasteurella multocida GN=carA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY  Q V +T PHIGNTG N +D E+   + +GL+IR L +  SN+R + +L +YL   N++ I+D+DTR +TR LR  G+  G + T E   + + LE+++S+  + G DL  +VS  E F       Q+G
Sbjct:   47 SYFRQIVTLTYPHIGNTGTNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRDKGAQAGCIMTGEI-DEAKALELAKSFGSMAGKDLAQEVSTGEIFTWTSGQWQLG 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ACIAD (Carbamoyl-phosphate synthase small chain OS=Acinetobacter sp. (strain ADP1) GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.659e-19
Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEES---RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SYA Q V +T PHIGNTG N +D ES    + +  GL+IR L +  SN+R  ++L  YL + N++ I+D+DTR +TR LR  G+  G +   E+ +++E L  +R++  + G+DL  +      FE  E + ++G
Sbjct:   47 SYAQQLVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNVVAIADIDTRKLTRILRDKGAQNGCILAGENITEEEALAKARAFGGLNGLDLAKECCDPNGFEWTEGSWELG 181          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECOLI (Carbamoyl-phosphate synthase small chain OS=Escherichia coli (strain K12) GN=carA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E +   + +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECO57 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O157:H7 GN=carA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E +   + +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBVY (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus (strain YJ016) GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SY+ Q V +T PHIGNTG   +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ +E ++
Sbjct:   47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBVU (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SY+ Q V +T PHIGNTG   +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ +E ++
Sbjct:   47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_PSEPK3.317e-1938.93Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_PSEAE3.317e-1939.02Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_SALTY4.333e-1939.84Carbamoyl-phosphate synthase small chain OS=Salmon... [more]
CARA_SALTI4.333e-1939.84Carbamoyl-phosphate synthase small chain OS=Salmon... [more]
CARA_PASMU4.333e-1939.39Carbamoyl-phosphate synthase small chain OS=Pasteu... [more]
CARA_ACIAD5.659e-1937.78Carbamoyl-phosphate synthase small chain OS=Acinet... [more]
CARA_ECOLI7.391e-1939.84Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_ECO577.391e-1939.84Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_VIBVY9.652e-1939.02Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]
CARA_VIBVU9.652e-1939.02Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
back to top