FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEPK (Carbamoyl-phosphate synthase small chain OS=Pseudomonas putida (strain KT2440) GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19 Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQI 390 SYA Q V +T PHIGNTG +D ES + + AGLVIR L + SNWR ++L YL N++ I+ +DTR +TR LR+ G+ G + ++ S++ + +R + + G+DL VS +E +E S ++ Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAESSRVWSAGLVIRDLPLLASNWRNTQSLPEYLKANNVVAIAGIDTRRLTRILREKGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVSTKERYEWRSSVWEL 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEAE (Carbamoyl-phosphate synthase small chain OS=Pseudomonas aeruginosa GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19 Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SYA Q V +T PHIGNTG +D E+ + + AGL+IR L + SNWR ++L +YL + I+ +DTR +TR LR+ GS G + +++ LE++R++ + G+DL +V+ E +E Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAEANRVWAAGLIIRDLPLIASNWRSKQSLPDYLKANGTVAIAGIDTRRLTRILREKGSQNGCILAGADATEERALELARAFPGLKGMDLAKEVTTAERYE 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SALTY (Carbamoyl-phosphate synthase small chain OS=Salmonella typhimurium GN=carA PE=3 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19 Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + +S + LE ++++ + G+DL +V+ E + + + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SALTI (Carbamoyl-phosphate synthase small chain OS=Salmonella typhi GN=carA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19 Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + +S + LE ++++ + G+DL +V+ E + + + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAETYRWTQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PASMU (Carbamoyl-phosphate synthase small chain OS=Pasteurella multocida GN=carA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY Q V +T PHIGNTG N +D E+ + +GL+IR L + SN+R + +L +YL N++ I+D+DTR +TR LR G+ G + T E + + LE+++S+ + G DL +VS E F Q+G Sbjct: 47 SYFRQIVTLTYPHIGNTGTNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRDKGAQAGCIMTGEI-DEAKALELAKSFGSMAGKDLAQEVSTGEIFTWTSGQWQLG 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ACIAD (Carbamoyl-phosphate synthase small chain OS=Acinetobacter sp. (strain ADP1) GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.659e-19 Identity = 51/135 (37.78%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEES---RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SYA Q V +T PHIGNTG N +D ES + + GL+IR L + SN+R ++L YL + N++ I+D+DTR +TR LR G+ G + E+ +++E L +R++ + G+DL + FE E + ++G Sbjct: 47 SYAQQLVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNVVAIADIDTRKLTRILRDKGAQNGCILAGENITEEEALAKARAFGGLNGLDLAKECCDPNGFEWTEGSWELG 181
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECOLI (Carbamoyl-phosphate synthase small chain OS=Escherichia coli (strain K12) GN=carA PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19 Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ E + + + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECO57 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O157:H7 GN=carA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19 Identity = 51/128 (39.84%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ E + + + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBVY (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus (strain YJ016) GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19 Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SY+ Q V +T PHIGNTG +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ +E ++ Sbjct: 47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBVU (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19 Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SY+ Q V +T PHIGNTG +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ +E ++ Sbjct: 47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |