FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRCO (Carbamoyl-phosphate synthase small chain OS=Streptomyces coelicolor GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19 Identity = 48/123 (39.02%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGQEPF 363 SY Q V+MT PH+GNTG+N +D ESR+ +++G V+R + SNWR +L LA + ++GIS +DTRA+TR LR+ G++ +G+ S + +L E+ ++ ++ G DL ++V+ E + Sbjct: 55 SYHRQVVVMTAPHVGNTGINDEDMESRRIWVSGYVVRDPARVPSNWRSTRSLDQELAAQGVVGISGIDTRALTRHLRERGAMRVGIFSGNALPDEGTMLAEVRQTPEMSGADLSAEVATTEAY 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_AQUAE (Carbamoyl-phosphate synthase small chain OS=Aquifex aeolicus GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19 Identity = 49/120 (40.83%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQE 357 SY GQ V+MT IGN GVN +D ES+ + G V++ SNWR ++L YL E N++GI +DTRA+ +++R+ GS+ GV+ST E K ++L++ +R DI +L+ +VS ++ Sbjct: 47 SYKGQIVVMTYTQIGNYGVNDEDIESKSVQVNGFVVKEAFFRYSNWRAKKSLDEYLKENNVVGIYGIDTRALVKKIREKGSMKGVISTVE-KDPKKLVQKARELPDISEQNLVEEVSAKD 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_YERPS (Carbamoyl-phosphate synthase small chain OS=Yersinia pseudotuberculosis GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18 Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES GLVIR L + SN+R E L YL NI+ I+D+DTR +TR LR+ G+ G + E LE ++++ + G+DL +V+ +E ++ ++ + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_YERPE (Carbamoyl-phosphate synthase small chain OS=Yersinia pestis GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18 Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES GLVIR L + SN+R E L YL NI+ I+D+DTR +TR LR+ G+ G + E LE ++++ + G+DL +V+ +E ++ ++ + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HYPNA (Carbamoyl-phosphate synthase small chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18 Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSD-QELLEMSRSWD-IVGIDLISDVSGQEPFEMVESTKQIGI*HHERNSN 420 SYA Q VL T PHIGN G N +D E A G + R SNWR E G +LA R I+G+S +DTRA+T+R+R+ G + + K D L+E++RSW+ + G DL V PFE E Q H +N Sbjct: 48 SYASQLVLFTFPHIGNVGANAEDHEESTVEAADAARGAIFREPITAPSNWRSTEDFGVWLARRGIIGLSGIDTRALTKRIREKGMPKAAICHKPDGKIDFDALVELARSWNGLDGADLADVVDQDAPFEHTEGLWQAATGHQTALAN 194
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ERWCT (Carbamoyl-phosphate synthase small chain OS=Erwinia carotovora subsp. atroseptica GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18 Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N +DEES GLVIR L + SN+R E+L YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE ++++ + G+DL +V+ E + ++ + Sbjct: 47 SYSRQIVTLTYPHIGNVGANANDEESPSVQAQGLVIRDLPLIASNYRSEESLSEYLKRNNIVAIADIDTRKLTRLLREKGAQNGCIIAGDAPDAVVALEKAKAFPGLKGMDLAKEVTTAESYSWLQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BUCAI (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348 SY+ Q V +T+PHIGN G N +DEES + ++ GL+IR LS+ SN+R ++ +YL E NI+ ISD+DTR +TR LR GS G + ++ ++ ++++ + +DL VS Sbjct: 51 SYSHQIVTLTHPHIGNVGTNSNDEESSKIYIKGLIIRDLSLTASNYRNKKSFSSYLKENNIIAISDIDTRKLTRILRTKGSQNGCIIEDKKQNYSIAYNKAKNFISLQDLDLAKKVS 167
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PHOPR (Carbamoyl-phosphate synthase small chain OS=Photobacterium profundum GN=carA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18 Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R +L +YL +NI+GI+++DTR +TR LR+ G+ G + ++ + L+ ++ + + G+DL V+ E ++ Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESNSIHAQGLVIRDLPLLASNFRNERSLSDYLKSQNIVGIAEIDTRKLTRILREKGAQNGCIMAGDNLDEALALDKAKEFPGLKGMDLAKVVTTAETYQ 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RHOBA (Carbamoyl-phosphate synthase small chain OS=Rhodopirellula baltica GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18 Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDV 345 SY GQ V MT P +GN G+N D E+R LAG +IR+ S SN+R +L +YL + ++GI+ +DTRA+ RR+R +G++ GVLST + + + S +VG DL+ +V Sbjct: 51 SYRGQLVTMTYPEMGNYGINSIDLENRGTSLAGFIIRNESRMHSNYRSEGSLSDYLNSQGVVGIAGIDTRALVRRIRSEGAMRGVLSTTDLDDASLVAKAKASPGLVGRDLVQEV 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BUCAP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18 Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348 SY+ Q V +T+PHIGN G N +DEES + + GL+IR +S +SN+R ++ +YL E NI+ ISD+DTR +TR LR GS G + ++ ++ + ++ + + G+DL VS Sbjct: 51 SYSHQIVTLTHPHIGNIGTNCNDEESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAISDIDTRKLTRILRTKGSQNGCIIEDKKENYSVAYQKAKKFLSLQGLDLAKKVS 167 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |