FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRCO (Carbamoyl-phosphate synthase small chain OS=Streptomyces coelicolor GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 48/123 (39.02%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGQEPF 363
            SY  Q V+MT PH+GNTG+N +D ESR+ +++G V+R  +   SNWR   +L   LA + ++GIS +DTRA+TR LR+ G++ +G+ S      +  +L E+ ++ ++ G DL ++V+  E +
Sbjct:   55 SYHRQVVVMTAPHVGNTGINDEDMESRRIWVSGYVVRDPARVPSNWRSTRSLDQELAAQGVVGISGIDTRALTRHLRERGAMRVGIFSGNALPDEGTMLAEVRQTPEMSGADLSAEVATTEAY 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_AQUAE (Carbamoyl-phosphate synthase small chain OS=Aquifex aeolicus GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.652e-19
Identity = 49/120 (40.83%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQE 357
            SY GQ V+MT   IGN GVN +D ES+   + G V++      SNWR  ++L  YL E N++GI  +DTRA+ +++R+ GS+ GV+ST E K  ++L++ +R   DI   +L+ +VS ++
Sbjct:   47 SYKGQIVVMTYTQIGNYGVNDEDIESKSVQVNGFVVKEAFFRYSNWRAKKSLDEYLKENNVVGIYGIDTRALVKKIREKGSMKGVISTVE-KDPKKLVQKARELPDISEQNLVEEVSAKD 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_YERPS (Carbamoyl-phosphate synthase small chain OS=Yersinia pseudotuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES      GLVIR L +  SN+R  E L  YL   NI+ I+D+DTR +TR LR+ G+  G +   E       LE ++++  + G+DL  +V+ +E ++ ++ +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_YERPE (Carbamoyl-phosphate synthase small chain OS=Yersinia pestis GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 50/128 (39.06%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES      GLVIR L +  SN+R  E L  YL   NI+ I+D+DTR +TR LR+ G+  G +   E       LE ++++  + G+DL  +V+ +E ++ ++ +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKEMYQWLQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HYPNA (Carbamoyl-phosphate synthase small chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 57/147 (38.78%), Postives = 75/147 (51.02%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSD-QELLEMSRSWD-IVGIDLISDVSGQEPFEMVESTKQIGI*HHERNSN 420
            SYA Q VL T PHIGN G N +D E      A    G + R      SNWR  E  G +LA R I+G+S +DTRA+T+R+R+ G     +    + K D   L+E++RSW+ + G DL   V    PFE  E   Q    H    +N
Sbjct:   48 SYASQLVLFTFPHIGNVGANAEDHEESTVEAADAARGAIFREPITAPSNWRSTEDFGVWLARRGIIGLSGIDTRALTKRIREKGMPKAAICHKPDGKIDFDALVELARSWNGLDGADLADVVDQDAPFEHTEGLWQAATGHQTALAN 194          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ERWCT (Carbamoyl-phosphate synthase small chain OS=Erwinia carotovora subsp. atroseptica GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N +DEES      GLVIR L +  SN+R  E+L  YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE ++++  + G+DL  +V+  E +  ++ +
Sbjct:   47 SYSRQIVTLTYPHIGNVGANANDEESPSVQAQGLVIRDLPLIASNYRSEESLSEYLKRNNIVAIADIDTRKLTRLLREKGAQNGCIIAGDAPDAVVALEKAKAFPGLKGMDLAKEVTTAESYSWLQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BUCAI (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348
            SY+ Q V +T+PHIGN G N +DEES + ++ GL+IR LS+  SN+R  ++  +YL E NI+ ISD+DTR +TR LR  GS  G +  ++ ++       ++++  +  +DL   VS
Sbjct:   51 SYSHQIVTLTHPHIGNVGTNSNDEESSKIYIKGLIIRDLSLTASNYRNKKSFSSYLKENNIIAISDIDTRKLTRILRTKGSQNGCIIEDKKQNYSIAYNKAKNFISLQDLDLAKKVS 167          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PHOPR (Carbamoyl-phosphate synthase small chain OS=Photobacterium profundum GN=carA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R   +L +YL  +NI+GI+++DTR +TR LR+ G+  G +   ++  +   L+ ++ +  + G+DL   V+  E ++
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESNSIHAQGLVIRDLPLLASNFRNERSLSDYLKSQNIVGIAEIDTRKLTRILREKGAQNGCIMAGDNLDEALALDKAKEFPGLKGMDLAKVVTTAETYQ 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RHOBA (Carbamoyl-phosphate synthase small chain OS=Rhodopirellula baltica GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDV 345
            SY GQ V MT P +GN G+N  D E+R   LAG +IR+ S   SN+R   +L +YL  + ++GI+ +DTRA+ RR+R +G++ GVLST +      + +   S  +VG DL+ +V
Sbjct:   51 SYRGQLVTMTYPEMGNYGINSIDLENRGTSLAGFIIRNESRMHSNYRSEGSLSDYLNSQGVVGIAGIDTRALVRRIRSEGAMRGVLSTTDLDDASLVAKAKASPGLVGRDLVQEV 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BUCAP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348
            SY+ Q V +T+PHIGN G N +DEES +  + GL+IR +S  +SN+R  ++  +YL E NI+ ISD+DTR +TR LR  GS  G +  ++ ++     + ++ +  + G+DL   VS
Sbjct:   51 SYSHQIVTLTHPHIGNIGTNCNDEESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAISDIDTRKLTRILRTKGSQNGCIIEDKKENYSVAYQKAKKFLSLQGLDLAKKVS 167          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_STRCO9.652e-1939.02Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_AQUAE9.652e-1940.83Carbamoyl-phosphate synthase small chain OS=Aquife... [more]
CARA_YERPS1.261e-1839.06Carbamoyl-phosphate synthase small chain OS=Yersin... [more]
CARA_YERPE1.261e-1839.06Carbamoyl-phosphate synthase small chain OS=Yersin... [more]
CARA_HYPNA1.261e-1838.78Carbamoyl-phosphate synthase small chain OS=Hyphom... [more]
CARA_ERWCT1.261e-1838.28Carbamoyl-phosphate synthase small chain OS=Erwini... [more]
CARA_BUCAI1.261e-1840.17Carbamoyl-phosphate synthase small chain OS=Buchne... [more]
CARA_PHOPR1.646e-1839.02Carbamoyl-phosphate synthase small chain OS=Photob... [more]
CARA_RHOBA2.150e-1841.74Carbamoyl-phosphate synthase small chain OS=Rhodop... [more]
CARA_BUCAP2.150e-1840.17Carbamoyl-phosphate synthase small chain OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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