FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVV (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=carA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SYAGQ V MT P +GN GV  +D ES +  +   +++      SNWR   +L +YL    +MGI  +DTRA+TR LR  G++ GV+ST+E+     L+E +R+   + G +L++ V+   P+
Sbjct:   45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAPY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVH (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=carA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SYAGQ V MT P +GN GV  +D ES +  +   +++      SNWR   +L +YL    +MGI  +DTRA+TR LR  G++ GV+ST+E+     L+E +R+   + G +L++ V+   P+
Sbjct:   45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAPY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CORGL (Carbamoyl-phosphate synthase small chain OS=Corynebacterium glutamicum GN=carA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSWD-IVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ESR  + ++AGLVIR L+   SNWR   +L   +A + I+GI  +DTRA+ R LR +GS+  G+ S  +  +  +EL+E+ ++   + G +L  +VS  E +
Sbjct:   61 SYHRQIVVATAPQIGNTGWNDEDNESRDGKIWVAGLVIRDLAARVSNWRATTSLQQEMAGQGIVGIGGIDTRALVRHLRNEGSIAAGIFSGADAQRPVEELVEIVKNQPAMTGANLSVEVSADETY 186          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XYLFT (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375
            SYA Q V +T PHIGNTG    D+E+ + + AGL++R +    SNWR   +L ++LA R ++ I+ +DTR +TR LR+ G+  G L   E    +      +   I G+DL   VS ++ +   E
Sbjct:   47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQGYSWYE 171          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISIN (Carbamoyl-phosphate synthase small chain OS=Listeria innocua GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+LS   +   +ELL   RS  +  +D + +VS  + F      K++
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEYPSNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILSA-ATADKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CLOPE (Carbamoyl-phosphate synthase small chain OS=Clostridium perfringens GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSD--QELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQIGI 396
            SY GQ V MT P IGN G+N +D ES++  + G ++R      +N+RC   L  YLA+  ++G+  +DTRA+T+ LR +G++ G++  + S  +  ++ LE   + D V I     VS  E +E+    K++ I
Sbjct:   45 SYYGQIVTMTYPLIGNYGINLEDLESKEPKVRGFIVREKCQYPNNFRCELELETYLAQNKVLGLDGIDTRALTKILRNNGTMKGIIVLDNSNLEDVKDKLEAFSNRDAVSI-----VSTNEKYEISGEGKKVAI 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACSU (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus subtilis GN=pyrAA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ V +T P IGN G+N DD ES   F+ GL+I+ L    SNWR A TL  YL  +NI G+  +DTR +TR +R  G+L G  ++ +   +  L  ++ +
Sbjct:   45 SYCGQIVTLTYPLIGNYGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAGALKGTFASSDEDIEAVLKRLNET 147          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SILPO (Carbamoyl-phosphate synthase small chain OS=Silicibacter pomeroyi GN=carA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGS-LIGVLSTEESKSD-QELLEMSRSW-DIVGIDLISDVSGQEPFEMVE 375
            SYAGQ V  T PHIGN GV  +D+E+     AG+V++      SNWR AE L  +LA R  + I  VDTR +TR +RQ G+  + +    E K D   L+  +R +  + G+DL  DV+  + +   E
Sbjct:   53 SYAGQIVTFTFPHIGNVGVTPEDDETTDPVAAGMVVKWDPTAASNWRAAEELKGWLARRGRIAIGGVDTRRLTRAIRQQGAPHVALAHDPEGKFDLAALIAAARGFAGLEGMDLAKDVTCAQSYRWDE 180          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_MYCTU (Carbamoyl-phosphate synthase small chain OS=Mycobacterium tuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   TL + L  + I+GI+ +DTRA+ R LR  GS+  GV S        +L+   R+   ++G DL  +VS  EP+
Sbjct:   46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRAVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEPY 170          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_AKKM8 (Carbamoyl-phosphate synthase small chain OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=carA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY+GQ V MT P IGN GVN +D ES +  ++G V+  L+   SNWR  E+LG +L ++ ++GI  VDTR I + LR  G++   L+TE   + +E +E +R+
Sbjct:   45 SYSGQIVTMTYPLIGNYGVNPEDGESGKAQVSGFVVAELAKVHSNWRATESLGPWLEKQGVIGIEGVDTRKIAKHLRSAGAMRACLTTE--LTPEEAVEAARN 145          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_DESVV2.013e-1638.52Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_DESVH2.013e-1638.52Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_CORGL2.629e-1640.48Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_XYLFT4.484e-1636.80Carbamoyl-phosphate synthase small chain OS=Xylell... [more]
CARA_LISIN4.484e-1637.69Carbamoyl-phosphate synthase small chain OS=Lister... [more]
CARA_CLOPE4.484e-1635.07Carbamoyl-phosphate synthase small chain OS=Clostr... [more]
CARA_BACSU4.484e-1641.75Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_SILPO7.648e-1639.06Carbamoyl-phosphate synthase small chain OS=Silici... [more]
CARA_MYCTU7.648e-1640.80Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_AKKM89.989e-1642.72Carbamoyl-phosphate synthase small chain OS=Akkerm... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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