FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVV (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=carA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16 Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SYAGQ V MT P +GN GV +D ES + + +++ SNWR +L +YL +MGI +DTRA+TR LR G++ GV+ST+E+ L+E +R+ + G +L++ V+ P+ Sbjct: 45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAPY 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVH (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=carA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16 Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SYAGQ V MT P +GN GV +D ES + + +++ SNWR +L +YL +MGI +DTRA+TR LR G++ GV+ST+E+ L+E +R+ + G +L++ V+ P+ Sbjct: 45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAPY 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CORGL (Carbamoyl-phosphate synthase small chain OS=Corynebacterium glutamicum GN=carA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16 Identity = 51/126 (40.48%), Postives = 77/126 (61.11%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSWD-IVGIDLISDVSGQEPF 363 SY Q V+ T P IGNTG N +D ESR + ++AGLVIR L+ SNWR +L +A + I+GI +DTRA+ R LR +GS+ G+ S + + +EL+E+ ++ + G +L +VS E + Sbjct: 61 SYHRQIVVATAPQIGNTGWNDEDNESRDGKIWVAGLVIRDLAARVSNWRATTSLQQEMAGQGIVGIGGIDTRALVRHLRNEGSIAAGIFSGADAQRPVEELVEIVKNQPAMTGANLSVEVSADETY 186
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XYLFT (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375 SYA Q V +T PHIGNTG D+E+ + + AGL++R + SNWR +L ++LA R ++ I+ +DTR +TR LR+ G+ G L E + + I G+DL VS ++ + E Sbjct: 47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQGYSWYE 171
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISIN (Carbamoyl-phosphate synthase small chain OS=Listeria innocua GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 49/130 (37.69%), Postives = 75/130 (57.69%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ + T P +GN GVN DD ES + G+V+R + SNWR TL +L E+ I GI+ +DTR +T+ +R++G+L G+LS + +ELL RS + +D + +VS + F K++ Sbjct: 46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEYPSNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILSA-ATADKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CLOPE (Carbamoyl-phosphate synthase small chain OS=Clostridium perfringens GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSD--QELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQIGI 396 SY GQ V MT P IGN G+N +D ES++ + G ++R +N+RC L YLA+ ++G+ +DTRA+T+ LR +G++ G++ + S + ++ LE + D V I VS E +E+ K++ I Sbjct: 45 SYYGQIVTMTYPLIGNYGINLEDLESKEPKVRGFIVREKCQYPNNFRCELELETYLAQNKVLGLDGIDTRALTKILRNNGTMKGIIVLDNSNLEDVKDKLEAFSNRDAVSI-----VSTNEKYEISGEGKKVAI 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACSU (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus subtilis GN=pyrAA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.484e-16 Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309 SY GQ V +T P IGN G+N DD ES F+ GL+I+ L SNWR A TL YL +NI G+ +DTR +TR +R G+L G ++ + + L ++ + Sbjct: 45 SYCGQIVTLTYPLIGNYGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAGALKGTFASSDEDIEAVLKRLNET 147
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SILPO (Carbamoyl-phosphate synthase small chain OS=Silicibacter pomeroyi GN=carA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16 Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGS-LIGVLSTEESKSD-QELLEMSRSW-DIVGIDLISDVSGQEPFEMVE 375 SYAGQ V T PHIGN GV +D+E+ AG+V++ SNWR AE L +LA R + I VDTR +TR +RQ G+ + + E K D L+ +R + + G+DL DV+ + + E Sbjct: 53 SYAGQIVTFTFPHIGNVGVTPEDDETTDPVAAGMVVKWDPTAASNWRAAEELKGWLARRGRIAIGGVDTRRLTRAIRQQGAPHVALAHDPEGKFDLAALIAAARGFAGLEGMDLAKDVTCAQSYRWDE 180
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_MYCTU (Carbamoyl-phosphate synthase small chain OS=Mycobacterium tuberculosis GN=carA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16 Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGQEPF 363 SY Q V+ T P IGNTG N +D ESR + ++AG +R S SNWR TL + L + I+GI+ +DTRA+ R LR GS+ GV S +L+ R+ ++G DL +VS EP+ Sbjct: 46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRAVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEPY 170
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_AKKM8 (Carbamoyl-phosphate synthase small chain OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=carA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.989e-16 Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309 SY+GQ V MT P IGN GVN +D ES + ++G V+ L+ SNWR E+LG +L ++ ++GI VDTR I + LR G++ L+TE + +E +E +R+ Sbjct: 45 SYSGQIVTMTYPLIGNYGVNPEDGESGKAQVSGFVVAELAKVHSNWRATESLGPWLEKQGVIGIEGVDTRKIAKHLRSAGAMRACLTTE--LTPEEAVEAARN 145 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |