FC876297

Overview
NameFC876297
Unique NameFC876297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.701e-77
Identity = 134/175 (76.57%), Postives = 149/175 (85.14%), Query Frame = 2
Query:  131 IHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            +H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT GGGDD+FNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D+ LDR RKLAD CTGLQGFL+F++                  VDYGKK KL F VYP+PQVST+V
Sbjct:    1 MHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAV 175          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA2_HOMAM (Tubulin alpha-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 8.688e-76
Identity = 133/181 (73.48%), Postives = 151/181 (83.43%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GN+CWELYCLEHGIQPDGQMPSDKTVG  +D+FNTFF+ETG+GKHVPRAVFVDLEP+VIDEVR+G YRQLFHPEQLISGKEDAANN+ARGHYTIGKE VD+ LDRIRKLAD CTGLQGFL+F +                  V+YGKK KL   +YP+PQ +TSV
Sbjct:    1 MRECISIHVGQAGVQMGNSCWELYCLEHGIQPDGQMPSDKTVGVCNDSFNTFFTETGSGKHVPRAVFVDLEPSVIDEVRSGIYRQLFHPEQLISGKEDAANNYARGHYTIGKEYVDIVLDRIRKLADQCTGLQGFLIFRSFGGGTGSGFASLLMERLSVEYGKKSKLEIAIYPAPQSATSV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA1_PNECA (Tubulin alpha chain OS=Pneumocystis carinii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.443e-71
Identity = 124/181 (68.51%), Postives = 148/181 (81.77%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIH+GQAG Q+GNACWELYCLEHGI+PDG++  +KT    DD F+TFFSETG+GK+VPR+++VDLEP VID+VRTGTYR LFHPEQLI+GKEDAANN+ARGHYT+GKE++D  LDRIR++ADNCTGLQGFLVF++                  VDYGKK KL F+VYP+PQVSTSV
Sbjct:    1 MREVISIHVGQAGTQIGNACWELYCLEHGIEPDGRLSPEKTTKPLDDGFSTFFSETGSGKYVPRSIYVDLEPNVIDQVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKELIDHVLDRIRRVADNCTGLQGFLVFHSFGGGTGSGFGALLLERLSVDYGKKSKLEFSVYPAPQVSTSV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.215e-69
Identity = 119/181 (65.75%), Postives = 149/181 (82.32%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIH+GQAG+Q+GNACWELYCLEHGIQPDG MP+  T  G  ++F TFFS+TG+G++VPR++FVDLEPTV+DE+RTGTY++LFHPEQ+I+GKEDAANN+ARGHYT+GKE++D  LDRIR+LADNC+GLQGF VF++                  VDYGKK KL F++YP+PQVST+V
Sbjct:    1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 179          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.535e-69
Identity = 121/181 (66.85%), Postives = 142/181 (78.45%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.535e-69
Identity = 121/181 (66.85%), Postives = 142/181 (78.45%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.535e-69
Identity = 120/181 (66.30%), Postives = 142/181 (78.45%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV +DLEPTV+DEVR GTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.292e-68
Identity = 120/181 (66.30%), Postives = 141/181 (77.90%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECIS+H+GQAG+Q+GNACWEL+CLEHGIQ DG   +  +    DD+F TFFSETG GKHVPRAV VDLEPTV+DEVR GTYR LFHPEQLI+GKEDAANN+ARGHYT+GKE +DL LDRIRKL D C+GLQGFL+F++                  +DYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.485e-67
Identity = 122/181 (67.40%), Postives = 139/181 (76.80%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE +SIHIGQAGIQVGNACWELYCLEHGI PDG +  D      DDAF+TFFSET  GK VPR VF+DLE  VIDEV+ G Y+ L+HPEQLI G EDAANN+ARGHYTIGKEI+++ LDRIRKL +NC+GLQGFL+FN+V                 +DYGKK KLGFTVYPSPQVST+V
Sbjct:    1 MREVLSIHIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGHYTIGKEIIEIALDRIRKLVENCSGLQGFLIFNSVGGGTGSGLGSLLLERLSLDYGKKSKLGFTVYPSPQVSTAV 181          
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 6.900e-65
Identity = 115/181 (63.54%), Postives = 140/181 (77.35%), Query Frame = 2
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIH+GQAG Q+GNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR+++VDLEP VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYT+GKE+VD   D+IR++ADNC+GLQGFLVF++                  ++Y KK KL F+VYP+PQVSTSV
Sbjct:    1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSV 181          
The following BLAST results are available for this feature:
BLAST of FC876297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBA_ONCKE2.701e-7776.57Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA2_HOMAM8.688e-7673.48Tubulin alpha-2 chain OS=Homarus americanus PE=2 S... [more]
TBA1_PNECA6.443e-7168.51Tubulin alpha chain OS=Pneumocystis carinii GN=TUB... [more]
TBA2_CAEEL1.215e-6965.75Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBA8_RAT3.535e-6966.85Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE3.535e-6966.85Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBA8_HUMAN3.535e-6966.30Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA8_BOVIN2.292e-6866.30Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBAN_GUITH1.485e-6767.40Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBA2_SCHPO6.900e-6563.54Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionC32003A11EF DevOvary1 Citrus clementina cDNA clone C32003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876297 ID=FC876297; Name=FC876297; organism=Citrus clementina; type=EST; length=655bp
GGAATCCATCCAATTTCACAAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTCTTCTTTTGGCTGTGTACGTCGTCGTTTTTCTTCTCT
TAGTCTGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGG
TATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCA
TTCAGCCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGAC
GATGCTTTCAACACCTTTTTCAGTGAAACAGGTGCAGGGAAGCACGTGCC
TCGTGCTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGA
CCGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAG
GAAGACGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGA
GATTGTTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCA
CTGGTCTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGC
TCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAA
GAAGTNCAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACAT
CTGTT
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