FC876297

Overview
NameFC876297
Unique NameFC876297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 75/184 (40.76%), Postives = 108/184 (58.70%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G++VPRA+ +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+     T    D   +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG--TAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTV 182
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 74/184 (40.22%), Postives = 108/184 (58.70%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+     T    D   +  N +F+E   G++VPRAV +DLEP  +D +R+G Y Q+F P+ L+ G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKG--TAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTV 182
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.269e-34
Identity = 74/184 (40.22%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + +  GQ G Q+G+  WE+ C EHGI P G+      +G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----IGSSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB5_MAIZE (Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB4_ELEIN (Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB1_ORYSJ (Tubulin beta-1 chain OS=Oryza sativa subsp. japonica GN=TUBB1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.658e-34
Identity = 76/184 (41.30%), Postives = 107/184 (58.15%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+      VG  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----VGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 75/184 (40.76%), Postives = 106/184 (57.61%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE + I  GQ G Q+G+  WE+ C EHGI P G+       G  D   +  N +++E   G+ VPRAV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +V
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRY-----AGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV 179
The following BLAST results are available for this feature:
BLAST of FC876297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBB6_ARATH4.362e-3540.76Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_SOLTU7.440e-3540.22Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU7.440e-3540.22Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB3_GOSHI1.269e-3440.22Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB5_WHEAT1.658e-3441.30Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB5_MAIZE1.658e-3441.30Tubulin beta-5 chain OS=Zea mays GN=TUBB5 PE=2 SV=... [more]
TBB4_ELEIN1.658e-3441.30Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 P... [more]
TBB1_WHEAT1.658e-3441.30Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_ORYSJ1.658e-3441.30Tubulin beta-1 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_ORYSJ4.823e-3440.76Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32003A11EF DevOvary1 Citrus clementina cDNA clone C32003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876297 ID=FC876297; Name=FC876297; organism=Citrus clementina; type=EST; length=655bp
GGAATCCATCCAATTTCACAAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTCTTCTTTTGGCTGTGTACGTCGTCGTTTTTCTTCTCT
TAGTCTGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGG
TATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCA
TTCAGCCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGAC
GATGCTTTCAACACCTTTTTCAGTGAAACAGGTGCAGGGAAGCACGTGCC
TCGTGCTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGA
CCGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAG
GAAGACGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGA
GATTGTTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCA
CTGGTCTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGC
TCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAA
GAAGTNCAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACAT
CTGTT
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