FC876297

Overview
NameFC876297
Unique NameFC876297
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.667e-84
Identity = 145/181 (80.11%), Postives = 159/181 (87.85%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKK KL F++YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.132e-83
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.132e-83
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKTVGGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.931e-83
Identity = 148/181 (81.77%), Postives = 157/181 (86.74%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG MPSD +VG   DAFNTFFSETG+GKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV                 VDYGKK KLGFT+YPSPQVST+V
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.931e-83
Identity = 148/181 (81.77%), Postives = 157/181 (86.74%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIHIGQAGIQVGNACWELYCLEHGI+PDG MPSD +VG   DAFNTFFSETG+GKHVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVFNAV                 VDYGKK KLGFT+YPSPQVST+V
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.522e-83
Identity = 142/181 (78.45%), Postives = 159/181 (87.85%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKE++DL LDRIRKLAD CTGLQGFL+F++                  VDYGKK KL F++YP+PQVST+V
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.522e-83
Identity = 148/181 (81.77%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRE ISIHIGQAG+QVGNACWELYCLEHGIQPDG MPS KT+G  DDAFNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V                 VDYGKK KLGFTVYPSPQV+T+V
Sbjct:    1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.294e-83
Identity = 144/181 (79.56%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.294e-83
Identity = 144/181 (79.56%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181
[Close]
BLAST of FC876297 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.294e-83
Identity = 144/181 (79.56%), Postives = 158/181 (87.29%), Query Frame = 2 
Query:  113 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKXKLGFTVYPSPQVSTSV 655
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKK KL F +YP+PQVST+V
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 181
The following BLAST results are available for this feature:
BLAST of FC876297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBA1A_CRIGR8.667e-8480.11Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_XENLA1.132e-8380.11Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA1_DROME1.132e-8380.11Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA6_MAIZE1.931e-8381.77Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA3_ELEIN1.931e-8381.77Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1D_BOVIN2.522e-8378.45Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA13_NAEGR2.522e-8381.77Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA3_RAT3.294e-8379.56Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE3.294e-8379.56Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_BOVIN3.294e-8379.56Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32003A11EF DevOvary1 Citrus clementina cDNA clone C32003A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876297 ID=FC876297; Name=FC876297; organism=Citrus clementina; type=EST; length=655bp
GGAATCCATCCAATTTCACAAGAAGGCGTCTTAATAAACGCCTTCGTTTA
GATTCAATTACTTCTTCTTTTGGCTGTGTACGTCGTCGTTTTTCTTCTCT
TAGTCTGCGAAAATGAGAGAGTGCATTTCAATCCATATCGGTCAGGCCGG
TATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGAGCACGGCA
TTCAGCCTGATGGCCAAATGCCAAGTGATAAGACAGTCGGAGGTGGCGAC
GATGCTTTCAACACCTTTTTCAGTGAAACAGGTGCAGGGAAGCACGTGCC
TCGTGCTGTCTTTGTTGATCTTGAGCCCACTGTCATTGATGAAGTGAGGA
CCGGAACTTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAG
GAAGACGCTGCCAACAACTTCGCCCGTGGCCACTATACCATTGGTAAGGA
GATTGTTGATCTCTGCCTTGACCGCATCAGGAAGCTGGCTGATAACTGCA
CTGGTCTCCAGGGATTCCTTGTTTTCAATGCTGTTGGTGGAGGAACTGGC
TCTGGTCTTGGGTCTCTTCTTCTGGAGAGGTTGTCTGTTGACTATGGAAA
GAAGTNCAAGTTGGGCTTCACTGTCTACCCATCTCCTCAGGTCTCCACAT
CTGTT
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