FC876298

Overview
NameFC876298
Unique NameFC876298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALSV (Bifunctional polymyxin resistance protein arnA OS=Salmonella schwarzengrund (strain CVM19633) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALPC (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SALSV2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPC2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPB2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALHS2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG22.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA42.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32003A12EF DevOvary1 Citrus clementina cDNA clone C32003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bp
AGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAACGGAAATGGCAGGCGC
AAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGATGACGATAT
GTATGATCGGCGCCGGCGGCTTCATCGGCTCTCATCTCTGCGAAAAGATT
CTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTACAATGACAA
GATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCGGCCGGATCC
AGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAAGGCCTCATC
AAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTACGCCGGCGGA
TTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTATTGACGCGC
TTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTGATTCACTTC
TCTACTTGTGAAGTATATGGAAAGACCATTGGAAGCTTTCTTCCTAAAGA
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCAT
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