FC876299

Overview
NameFC876299
Unique NameFC876299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:9..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.956e-41
Identity = 84/131 (64.12%), Postives = 94/131 (71.76%), Query Frame = 3
Query:  156 GSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDG----CAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            G ++AKDYTDPPP PL  A EL  WS YRA+IAEFIA            IGYK QTD + +  G    C GVG+L IAW FGGMIFVLVYCT GISGGHINPAVT GLFL RKVS+VRA++YMVA CL A+
Sbjct:   14 GEFAAKDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAV 144          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.016e-40
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  156 GSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDP-AKNVDG-CAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            G ++AKDYTDPPP PL  A EL  WS YRA+IAEFIA            IGYK QTD  A   D  C GVG+L IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++Y+VA CL AI
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAI 142          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.327e-40
Identity = 85/129 (65.89%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  156 GSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDP-AKNVDG-CAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            G ++AKDYTDPPP PL  A EL  WS YRA+IAEFIA            IGYK QTD  A   D  C GVG+L IAW FGGMIFVLVYCT GISGGHINPAVT GLFL RKVS+VRA++Y+VA CL AI
Sbjct:   14 GEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAI 142          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.042e-40
Identity = 83/139 (59.71%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            M K+  V    +  A+DY DPPP PL   +EL KWS YRALIAEF+A            IGYK QTD A N     C GVG+L IAW FGGMIF+LVYCT G+SGGHINPAVT+GLFL RKVS+VRA++YM A CL AI
Sbjct:    1 MGKEVDVSTLEAGGARDYIDPPPAPLVDVDELGKWSLYRALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAI 139          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.123e-39
Identity = 80/137 (58.39%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            MAKD   V    +  +DY DPPP P     EL KWSFYRA+IAEF+A            IGYK Q+D       C GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+ RA++Y++A CL AI
Sbjct:    1 MAKDVEAVPGEGFQTRDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAI 137          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.502e-39
Identity = 84/136 (61.76%), Postives = 91/136 (66.91%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVA 533
            M KD  + E  S S KDY DPPP   F   EL KWSFYRA+IAEFIA            IG+KSQTD       CA VG+L I+W FGGMIF+LVYCT GISGGHINPAVT GLFL  KVS+VRAV YMVA CL A
Sbjct:    1 MTKDE-LTEEESLSGKDYLDPPPVKTFEVRELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGA 135          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.622e-38
Identity = 80/139 (57.55%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  126 MAKDTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            M K+  V   G    +DY DPPP PL   +EL +WS YRA+IAEF+A            IGYK QTD + + D   C GVG+L IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++Y+VA CL A+
Sbjct:    1 MGKEADVEAGG---VRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAV 136          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.118e-38
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  135 DTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVD--GCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            D   +E G    +DY DPPP PL   +EL KWS YRA+IAEF+A            IGYK QTD + +     C+GVGIL IAW FGGMIF+LVYCT GISGGHINPAVT GLFL RKVS+VRA++YM A  L AI
Sbjct:    6 DVSTLEAGGVRDRDYADPPPAPLIDIDELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAI 141          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 83/134 (61.94%), Postives = 89/134 (66.42%), Query Frame = 3
Query:  135 DTGVVEHGSYSAKDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            + G   HG    KDY DPPP PL    EL  WSFYRALIAEFIA            IG+K QT P      C GVG+L IAW FGGMIFVLVYCT GISGGHINPAVT GLFL RKVS+VRA+ YM+A CL AI
Sbjct:    7 EEGKTHHG----KDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGP------CDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAI 130          
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.719e-38
Identity = 80/122 (65.57%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  171 KDYTDPPPEPLFHAEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            KDYTDPPP PLF   EL  WSFYRALIAEFIA            IGYK Q+    + D C GVG L IAW FGGMIF+LVYCT GISGGHINPAVT GL L RKVS++RAVMY+VA CL  I
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGI 132          
The following BLAST results are available for this feature:
BLAST of FC876299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PIP22_MAIZE5.956e-4164.12Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ORYSJ1.016e-4065.12Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE1.327e-4065.89Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP24_ORYSJ5.042e-4059.71Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP21_ARATH1.123e-3958.39Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP26_ARATH2.502e-3961.76Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP25_ORYSJ1.622e-3857.55Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP26_MAIZE2.118e-3858.82Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP27_ARATH4.719e-3861.94Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP26_ORYSJ4.719e-3865.57Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC32003B01EF DevOvary1 Citrus clementina cDNA clone C32003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876299 ID=FC876299; Name=FC876299; organism=Citrus clementina; type=EST; length=539bp
AAAACTAGCAAAAAAAAAGCAAAAGAAAAAGAAAAAGGAAAAGGCTTCTC
TCTCGCTGTGCTTGTGGCTTTGCAGTGCTCTCAGATTTCTCTGTTTCTCT
CCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGTAG
AGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCG
CTATTCCACGCCGAGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGAT
AGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTG
TCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGT
GCCGGCGTCGGCATCCTCTGTATCGCCTGGGGCTTCGGCGGCATGATCTT
TGTCCTCGTTTACTGCACCGACGGTATCTCAGGTGGTCACATTAACCCGG
CAGTGACGATCGGACTATTCTTGGTCCGCAAGGTGTCGATGGTCCGTGCT
GTGATGTACATGGTGGCGCACTGCCTTGTTGCTATCTCC
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