FC876299

Overview
NameFC876299
Unique NameFC876299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:9..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876299 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 3 
Query:  210 AEELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILCIAWGFGGMIFVLVYCTDGISGGHINPAVTIGLFLVRKVSMVRAVMYMVAHCLVAI 536
            A E  K +F+RA+IAEF+A            +G+    +   N        I+ ++  FG  I  +      +SG H+NPAVT+G  L  ++S+++AVMY++A CL A+
Sbjct:    2 ASEFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAV 110
The following BLAST results are available for this feature:
BLAST of FC876299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AQPA_RANES4.918e-1133.03Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32003B01EF DevOvary1 Citrus clementina cDNA clone C32003B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876299 ID=FC876299; Name=FC876299; organism=Citrus clementina; type=EST; length=539bp
AAAACTAGCAAAAAAAAAGCAAAAGAAAAAGAAAAAGGAAAAGGCTTCTC
TCTCGCTGTGCTTGTGGCTTTGCAGTGCTCTCAGATTTCTCTGTTTCTCT
CCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACTGGGGTGGTAG
AGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCCGGAGCCG
CTATTCCACGCCGAGGAGCTGACCAAATGGTCATTCTACAGAGCCTTGAT
AGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTCTTGACTG
TCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGACGGCTGT
GCCGGCGTCGGCATCCTCTGTATCGCCTGGGGCTTCGGCGGCATGATCTT
TGTCCTCGTTTACTGCACCGACGGTATCTCAGGTGGTCACATTAACCCGG
CAGTGACGATCGGACTATTCTTGGTCCGCAAGGTGTCGATGGTCCGTGCT
GTGATGTACATGGTGGCGCACTGCCTTGTTGCTATCTCC
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